View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_low_17 (Length: 250)
Name: NF13815_low_17
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 29442865 - 29443080
Alignment:
| Q |
19 |
atttaatagacaacatgaattaaaacaagttaattgtcattctgatccctaggtcatgaatatattgaaattactaaaacaaccttgagtatgtctttat |
118 |
Q |
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| T |
29442865 |
atttaatagacaacatgaattaaaacaagttaattgtcattctgatccctaggtcatgaatatattgaaattactaaaacaaccttgaatgtgtctttat |
29442964 |
T |
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| Q |
119 |
tggtgattttacggatcaaactaaataatgaaagacatattagagaaccaaactaactaacaaaagacaaatttgatgaccaaactcgttaaaaaataca |
218 |
Q |
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| T |
29442965 |
tggtgattttacggatcaaactaaataatgaaagacatatcagagaaccaaactaattaacaaaagacaaatttgatgaccaaactagttaaaaaataca |
29443064 |
T |
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| Q |
219 |
catccgaagatatttt |
234 |
Q |
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| T |
29443065 |
catccgaagagatttt |
29443080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 10002650 - 10002695
Alignment:
| Q |
149 |
aaagacatattagagaaccaaactaactaacaaaagacaaatttga |
194 |
Q |
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| T |
10002650 |
aaagacacattcgagaatcaaactaactaacgaaagacaaatttga |
10002695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 10836248 - 10836288
Alignment:
| Q |
165 |
accaaactaactaacaaaagacaaatttgatgaccaaactc |
205 |
Q |
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| T |
10836248 |
accaaactaactaacgaaagacacatttgaggaccaaactc |
10836288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 43143958 - 43144027
Alignment:
| Q |
132 |
gatcaaactaaataatgaaagacatattagagaaccaaactaactaacaaaagacaaatttgatgaccaa |
201 |
Q |
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| T |
43143958 |
gatcaaactaacaaatgaaagacatattagaggaccaaattaagttacagaaaacatatttgaggaccaa |
43144027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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