View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_low_3 (Length: 490)
Name: NF13815_low_3
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Complemental strand, 33496323 - 33495851
Alignment:
| Q |
17 |
agattggagatggctcgaaaataaatctatgtaccatgccttgaatacgtaatctttcttctcacaaaccttcaactcctatgtcgtctcttcatgaaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33496323 |
agattggagatggctcgaaaataaatctatgtaccatgccatgaatacgtaatctttcttctcacaaaccttcaactcctatgccgtctcttcatgaaga |
33496224 |
T |
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| Q |
117 |
tcttacagtgaattacttgttgaatacggaaggcctttcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctcc |
216 |
Q |
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||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33496223 |
tcttacagtgaattacttgctgaat-cggaaggcctctcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctcc |
33496125 |
T |
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| Q |
217 |
atccctctccataaccgtctgttgtttgacaccagaatatggaaataacaacacccttatttgtattgatctactccaccctcatgattctgcccacgat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33496124 |
atccctctccataaccgtctgttgtttgacaccagaatatggaaataacaacacccttatttgtattgatctactccaccctcatgattctgcccacaat |
33496025 |
T |
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| Q |
317 |
aattctctttggatgaatatctagaatcttgatattcctcaccgtgttcgagcctttatatggcatttagctcatcattgcttgcccgcccatgtcaatc |
416 |
Q |
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|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| |
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| T |
33496024 |
aattctctttggatgaatatctggactctcgatattcctcaccgtgttcgagcctttatgtggcatttagctcatcatttcttgcccacccgtgtcaatc |
33495925 |
T |
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| Q |
417 |
ttaatgcaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattcatctc |
490 |
Q |
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| T |
33495924 |
ttaatgtaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattaatctc |
33495851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 4243225 - 4243467
Alignment:
| Q |
19 |
attggagatggctcgaaaataaatctatgtaccatgccttgaatacgtaatctttcttctcacaaaccttcaactcctatgtcgtctcttcatgaagatc |
118 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||| || ||| ||||||||| | |
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| T |
4243225 |
attggagatggctcgaaaataaatctatggaccatgccttggatacgtaatcttccttctcacaaaccctcaactcctatgccggctcatcatgaagacc |
4243324 |
T |
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| Q |
119 |
ttacagtgaattacttgttgaatacggaaggcctttcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctccat |
218 |
Q |
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| T |
4243325 |
ttacagtgaattacttgttgaatctggaaggcctctcttggaaccaacaaatagttacatccattttcaatccccaagacgctgctgctatactctccat |
4243424 |
T |
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| Q |
219 |
ccctctccataaccgtctgttgtttgacaccagaatatggaaa |
261 |
Q |
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| T |
4243425 |
ccctctacataaccgtctgttgtctgacaccagaatatggaaa |
4243467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 275 - 490
Target Start/End: Original strand, 4243510 - 4243725
Alignment:
| Q |
275 |
atttgtattgatctactccaccctcatgattctgcccacgataattctctttggatgaatatctagaatcttgatattcctcaccgtgttcgagccttta |
374 |
Q |
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| T |
4243510 |
atttgtagtgatctactccaccctcatgattctgcccacaataattcttcatggatgaatatctggaatctcaatattcctcaccgtgtccgagcctttc |
4243609 |
T |
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| Q |
375 |
tatggcatttagctcatcattgcttgcccgcccatgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcgga |
474 |
Q |
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|||||| |||||||||| ||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
4243610 |
tatggcgtttagctcataattgcttgcccactcgtgtcaatcttaatgcaagaggaatccagtgcgaggaatcatgtgttatgtttgaaaattttgcgga |
4243709 |
T |
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| Q |
475 |
atcccacattcatctc |
490 |
Q |
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| T |
4243710 |
atgccacactcatctc |
4243725 |
T |
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