View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13815_low_4 (Length: 443)

Name: NF13815_low_4
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13815_low_4
NF13815_low_4
[»] chr1 (22 HSPs)
chr1 (20-431)||(17891271-17891684)
chr1 (263-302)||(5459171-5459210)
chr1 (263-302)||(31585792-31585831)
chr1 (366-433)||(38565009-38565076)
chr1 (326-433)||(42919675-42919782)
chr1 (263-302)||(46692851-46692890)
chr1 (264-302)||(7857664-7857702)
chr1 (264-302)||(41920463-41920501)
chr1 (264-302)||(46814499-46814537)
chr1 (210-306)||(13987577-13987674)
chr1 (386-433)||(9067577-9067624)
chr1 (263-302)||(17033596-17033635)
chr1 (264-302)||(4651791-4651829)
chr1 (264-302)||(15840944-15840982)
chr1 (264-302)||(24658940-24658978)
chr1 (264-302)||(38544770-38544808)
chr1 (264-296)||(6583254-6583286)
chr1 (264-296)||(19598647-19598679)
chr1 (264-296)||(24684516-24684548)
chr1 (264-296)||(27031878-27031910)
chr1 (264-296)||(27905423-27905455)
chr1 (264-304)||(38564912-38564952)
[»] chr5 (11 HSPs)
chr5 (197-431)||(18557480-18557709)
chr5 (208-298)||(25341652-25341743)
chr5 (264-302)||(13954266-13954304)
chr5 (264-302)||(34378109-34378147)
chr5 (264-296)||(33258920-33258952)
chr5 (258-301)||(12046260-12046303)
chr5 (265-296)||(39184225-39184256)
chr5 (264-302)||(7195271-7195309)
chr5 (264-302)||(7392063-7392101)
chr5 (264-302)||(23426355-23426393)
chr5 (208-303)||(39368816-39368912)
[»] chr8 (11 HSPs)
chr8 (208-425)||(544263-544477)
chr8 (208-425)||(40531188-40531398)
chr8 (263-302)||(24995427-24995466)
chr8 (263-302)||(31207394-31207433)
chr8 (263-296)||(34389043-34389076)
chr8 (264-296)||(33967337-33967369)
chr8 (263-302)||(32066327-32066366)
chr8 (264-302)||(15821411-15821449)
chr8 (264-302)||(15906697-15906735)
chr8 (266-303)||(31179859-31179896)
chr8 (264-296)||(36630848-36630880)
[»] chr2 (17 HSPs)
chr2 (331-431)||(14328168-14328268)
chr2 (211-431)||(44888227-44888443)
chr2 (264-308)||(4162046-4162090)
chr2 (263-302)||(10524107-10524146)
chr2 (264-302)||(14405209-14405247)
chr2 (264-302)||(22885165-22885203)
chr2 (264-302)||(33788664-33788702)
chr2 (210-306)||(9560816-9560913)
chr2 (264-296)||(1269494-1269526)
chr2 (263-302)||(39338897-39338936)
chr2 (264-302)||(7874302-7874340)
chr2 (264-302)||(14106556-14106594)
chr2 (264-302)||(15126442-15126480)
chr2 (259-296)||(23665442-23665479)
chr2 (264-296)||(10173616-10173648)
chr2 (264-296)||(16959993-16960025)
chr2 (208-295)||(42048255-42048343)
[»] chr7 (19 HSPs)
chr7 (197-405)||(35206629-35206831)
chr7 (218-306)||(27993564-27993653)
chr7 (263-302)||(38306271-38306310)
chr7 (210-306)||(46262147-46262244)
chr7 (262-302)||(13311848-13311888)
chr7 (264-302)||(6584920-6584958)
chr7 (264-302)||(9349760-9349798)
chr7 (264-302)||(34389973-34390011)
chr7 (264-302)||(38485567-38485605)
chr7 (264-302)||(41089780-41089818)
chr7 (266-302)||(10244195-10244231)
chr7 (266-301)||(8745166-8745201)
chr7 (265-296)||(17802854-17802885)
chr7 (268-302)||(3478367-3478401)
chr7 (264-302)||(6716768-6716806)
chr7 (262-296)||(9428143-9428177)
chr7 (264-302)||(42533284-42533322)
chr7 (259-296)||(25153226-25153263)
chr7 (262-302)||(11379159-11379199)
[»] chr4 (18 HSPs)
chr4 (210-296)||(37707393-37707480)
chr4 (259-303)||(40813812-40813856)
chr4 (264-306)||(53756767-53756809)
chr4 (264-296)||(31050700-31050732)
chr4 (264-296)||(39041312-39041344)
chr4 (263-302)||(4305735-4305774)
chr4 (263-302)||(38637264-38637303)
chr4 (267-302)||(39421045-39421080)
chr4 (264-298)||(2061774-2061808)
chr4 (264-302)||(25753183-25753221)
chr4 (264-296)||(8255038-8255070)
chr4 (264-296)||(8268456-8268488)
chr4 (270-306)||(17416537-17416573)
chr4 (264-296)||(21387242-21387274)
chr4 (268-296)||(26474851-26474879)
chr4 (264-296)||(36962653-36962685)
chr4 (264-296)||(38929838-38929870)
chr4 (262-302)||(46698817-46698857)
[»] chr6 (8 HSPs)
chr6 (264-302)||(26534751-26534789)
chr6 (264-302)||(26216051-26216089)
chr6 (320-431)||(12129278-12129390)
chr6 (264-306)||(7546457-7546499)
chr6 (264-298)||(16510337-16510371)
chr6 (264-302)||(32935371-32935409)
chr6 (268-302)||(34105428-34105462)
chr6 (264-296)||(34092806-34092838)
[»] chr3 (20 HSPs)
chr3 (264-306)||(20710736-20710778)
chr3 (263-302)||(17550967-17551006)
chr3 (263-302)||(34475786-34475825)
chr3 (264-302)||(14879446-14879484)
chr3 (264-302)||(19176513-19176551)
chr3 (268-302)||(37123397-37123431)
chr3 (264-302)||(14193951-14193989)
chr3 (264-302)||(14755297-14755335)
chr3 (264-302)||(40023604-40023642)
chr3 (264-302)||(43012386-43012424)
chr3 (264-302)||(47945717-47945755)
chr3 (210-306)||(3968578-3968675)
chr3 (210-306)||(4000130-4000227)
chr3 (264-293)||(24099368-24099397)
chr3 (267-299)||(2392541-2392573)
chr3 (267-299)||(2394288-2394320)
chr3 (262-302)||(5556579-5556619)
chr3 (268-308)||(23328376-23328416)
chr3 (258-302)||(30127267-30127311)
chr3 (264-296)||(45398807-45398839)
[»] scaffold0224 (1 HSPs)
scaffold0224 (326-433)||(18549-18656)
[»] scaffold0200 (1 HSPs)
scaffold0200 (264-296)||(19394-19426)
[»] scaffold0119 (1 HSPs)
scaffold0119 (264-296)||(42176-42208)
[»] scaffold0068 (1 HSPs)
scaffold0068 (263-302)||(35803-35842)
[»] scaffold1613 (1 HSPs)
scaffold1613 (264-302)||(1049-1087)
[»] scaffold0620 (2 HSPs)
scaffold0620 (264-302)||(3841-3879)
scaffold0620 (264-296)||(8140-8172)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 17891271 - 17891684
Alignment:
Q  20 gatatgatttggcaatctaattttaattggttttgagtgatactttttctattctactacaggatgggaaagagttatttttatttttgttgtttggttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17891271 gatatgatttggcaatctaattttaattggttttgagtgatactttt-ctattctactacaggatgggaaagagttatttttatttttgttgtttggttt 17891369  T
Q  120 atttgggatatacaagaaaaaagatgagggacaag-------taagactcaagcaaac-aagaatagaagagtccatccaaaatcttgggcaagtgaagg 211  Q
    |||||||||||||||| |||||||||||||| |||       |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||    
T  17891370 atttgggatatacaag-aaaaagatgagggaaaagttagttttaagactcaagcaaacaaagaatagaagagtccatccaaaatcttgggcaggttaagg 17891468  T
Q  212 tgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagctagctag 310  Q
    ||||||||||| ||| | || |||||||||||| ||||| ||||||| | || |||||| ||| ||||||||||||||||||||||||||||| || |      
T  17891469 tgtcttctctgatggatcgtgagttgaggggtgccgtgtagatgtgtgttgggagtctgatggaccgatcacttttgattcgagattgggagcaagtt-- 17891566  T
Q  311 nnnnnnnnnatgcaagttcttttcggctttttggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttgatgcaacatatcatc 410  Q
             ||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  17891567 ---ttctttatgcaagttcttttcagctttttggtggctcctccgatttatcggttgttgagtggtgtgtgaatttgatcgtttgatgcaacatatcatc 17891663  T
Q  411 gttggttgcttttttgatctc 431  Q
    || || |||||||||||||||    
T  17891664 gtcggctgcttttttgatctc 17891684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 5459171 - 5459210
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  5459171 tagtctggtgggccgatcacttttgattcgagatcgggag 5459210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 31585831 - 31585792
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  31585831 tagtctggtgggccgatcacttttgattcgagatcgggag 31585792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 433
Target Start/End: Original strand, 38565009 - 38565076
Alignment:
Q  366 tgttgagtggtgggtgaatttgatcgtttgatgcaacatatcatcgttggttgcttttttgatctctg 433  Q
    ||||||| |||||| || | ||||||||||| |||||||||| |||| || |||||||||||||||||    
T  38565009 tgttgagcggtgggcgattctgatcgtttgaagcaacatatcgtcgtcggctgcttttttgatctctg 38565076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 433
Target Start/End: Complemental strand, 42919782 - 42919675
Alignment:
Q  326 gttcttttcggctttttggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttgatgcaacatatcatcgttggttgctttttt 425  Q
    |||||||| ||||| |||  | ||||||||  ||||||  |||||||||||||| || | ||||||||||| || ||  |||||||| || |||||||||    
T  42919782 gttcttttaggcttgttgatgtctcctccggcttatcggatgttgagtggtgggcgactctgatcgtttgaagctactcatcatcgtcggctgctttttt 42919683  T
Q  426 gatctctg 433  Q
    ||||||||    
T  42919682 gatctctg 42919675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 46692890 - 46692851
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  46692890 tagtctggtgggccgatcacttttgattcgagatcgggag 46692851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 7857664 - 7857702
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  7857664 agtctggtgggccgatcacttttgattcgagatcgggag 7857702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 41920463 - 41920501
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  41920463 agtctggtgggccgatcacttttgattcgagatcgggag 41920501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 46814537 - 46814499
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  46814537 agtctggtgggccgatcacttttgattcgagatcgggag 46814499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 13987577 - 13987674
Alignment:
Q  210 ggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||| ||||||||| | || |||||||||||| | || |||| ||| |||| | ||||||||||| ||| |||||| |||||||| |||||||||    
T  13987577 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggaatctggtgggccaatcgcttttgcttcgagatcgggagctag 13987674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 9067577 - 9067624
Alignment:
Q  386 tgatcgtttgatgcaacatatcatcgttggttgcttttttgatctctg 433  Q
    |||||||||||||||| | ||||||||||| |||| ||||||||||||    
T  9067577 tgatcgtttgatgcaaaaaatcatcgttggctgctcttttgatctctg 9067624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 17033596 - 17033635
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  17033596 tagtctggtgggccgatcacttttgaatcgagatcgggag 17033635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 4651791 - 4651829
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  4651791 agtctggggggccgatcacttttgattcgagatcgggag 4651829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 15840982 - 15840944
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  15840982 agtctggtgggctgatcacttttgattcgagatcgggag 15840944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 24658940 - 24658978
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  24658940 agtctggtgggccaatcacttttgattcgagatcgggag 24658978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 38544808 - 38544770
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  38544808 agtctggtgggccgatcgcttttgattcgagatcgggag 38544770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 6583286 - 6583254
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||| ||||||||||||||||||||||    
T  6583286 agtctggtggaccgatcacttttgattcgagat 6583254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 19598647 - 19598679
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||||||||||| |||||||||||||||    
T  19598647 agtctggtgggccgatcgcttttgattcgagat 19598679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 24684548 - 24684516
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||||||||||||||||| |||||||||    
T  24684548 agtctggtgggccgatcacttttaattcgagat 24684516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 27031910 - 27031878
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    ||||| |||||||||||||||||||||||||||    
T  27031910 agtctagtgggccgatcacttttgattcgagat 27031878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 27905423 - 27905455
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||| ||||||||||||||||||||||    
T  27905423 agtctggtggaccgatcacttttgattcgagat 27905455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 38564912 - 38564952
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggagct 304  Q
    ||||| ||||||||||| ||||||||||||||| |||||||    
T  38564912 agtctcgtgggccgatcgcttttgattcgagatcgggagct 38564952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 197 - 431
Target Start/End: Original strand, 18557480 - 18557709
Alignment:
Q  197 ttgggcaagtgaaggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgaga 295  Q
    ||||||| || ||||||||| ||||||||||| || |||||||||||| ||| ||||| ||| |||| |||||  |||||||||||||||||||||||||    
T  18557480 ttgggcaggttaaggtgtctactctggtgggtcgtgagttgaggggtgccgttttgatttgtgtcgggagtcta-tgggccgatcacttttgattcgaga 18557578  T
Q  296 ttgggagctagctagnnnnnnnnnatgcaagttcttttcggctttttggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttg 395  Q
    |   ||||||| |           |||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  18557579 tccagagctagtt-----tttttaatgcaagttcttttcgactttttggtggctcctccgacttatcggttgttgagtggtgggtgaatctgatcgtttg 18557673  T
Q  396 atgcaacatatcatcgttggttgcttttttgatctc 431  Q
    ||||||||||||||| | || |||||||||||||||    
T  18557674 atgcaacatatcatcctcggctgcttttttgatctc 18557709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 25341652 - 25341743
Alignment:
Q  208 aaggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattg 298  Q
    ||||| ||| ||||||||  | || |||| ||||||| | || |||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  25341652 aaggtttctgctctggtgcttcgtgagttcaggggtgccttgatgatgtgtgtcgggagtctggtgggccgatcacttttgatttgagattg 25341743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 13954304 - 13954266
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  13954304 agtctggtgggccgatcacttttgattcgagatcgggag 13954266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 34378109 - 34378147
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  34378109 agtctggtgggccgatcacttttgattcgagatcgggag 34378147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 33258952 - 33258920
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||||||||||    
T  33258952 agtctggtgggccgatcacttttgattcgagat 33258920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 12046260 - 12046303
Alignment:
Q  258 ttcggtagtctggtgggccgatcacttttgattcgagattggga 301  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||    
T  12046260 ttcggaagtttggtgggccgatcacttttgattcgagatcggga 12046303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 296
Target Start/End: Complemental strand, 39184256 - 39184225
Alignment:
Q  265 gtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||||||||||||||||||||||||||    
T  39184256 gtctggtgggccgatcacttttgattcgagat 39184225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 7195309 - 7195271
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  7195309 agtctggtgagccgatcacttttgattcgagatcgggag 7195271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 7392101 - 7392063
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  7392101 agtctggtggaccgatcacttttgattcgagatcgggag 7392063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 23426355 - 23426393
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  23426355 agtctggtggaccgaacacttttgattcgagattgggag 23426393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 39368816 - 39368912
Alignment:
Q  208 aaggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagc 303  Q
    ||||||||||| ||||||| | || ||||||| |||||| | ||||  ||| |||| ||||| ||||||||| | ||||||||||||| | ||||||    
T  39368816 aaggtgtcttccctggtggttcgtgagttgagaggtgtctttttgacttgtgtcgggagtcttgtgggccgaccgcttttgattcgaggtcgggagc 39368912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 208 - 425
Target Start/End: Complemental strand, 544477 - 544263
Alignment:
Q  208 aaggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||||| ||||||||| |||| |||||| || || ||| ||||| ||| |||| ||||||||||| |||||||||| |||||||||| || ||||||    
T  544477 aaggtgtctgctctggtggattgtgagttgacggatgccgttttgatttgtgtcgggagtctggtgggtcgatcactttagattcgagatcggaagctag 544378  T
Q  307 ctagnnnnnnnnnatgcaagttcttttcggctttttggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttgatgcaacatat 406  Q
     |           ||||||||||||||||||||||| | ||||||||| | | |||| |||||||||||||||||||| |||||||||||||||||||||    
T  544377 tt----tttttttatgcaagttcttttcggcttttttgtggctcctccaactcatcggttgttgagtggtgggtgaatctgatcgtttgatgcaacatat 544282  T
Q  407 catcgttggttgctttttt 425  Q
    ||| || || |||||||||    
T  544281 cattgtcggctgctttttt 544263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 208 - 425
Target Start/End: Original strand, 40531188 - 40531398
Alignment:
Q  208 aaggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||||| |||||||||||  | |||||||||||| ||| ||||| ||| ||   |||||| |||||||||||||||||||||||||| |||||||||    
T  40531188 aaggtgtctgctctggtgggtcttgagttgaggggtgccgttttgatttgtgtca--agtctgatgggccgatcacttttgattcgagatcgggagctag 40531285  T
Q  307 ctagnnnnnnnnnatgcaagttcttttcggctttttggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttgatgcaacatat 406  Q
     |            |||||||||||| ||||||||||| |||||||| || |||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  40531286 tt------ttttggtgcaagttctttccggctttttggtggctcctctgacttatcggttgttgagtggtgggtgaatctgatcgtgtgatgcaacatat 40531379  T
Q  407 catcgttggttgctttttt 425  Q
    |||||| || | |||||||    
T  40531380 catcgtcggctactttttt 40531398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 24995466 - 24995427
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  24995466 tagtctggtgggccgatcacttttgattcgagatcgggag 24995427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 31207433 - 31207394
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  31207433 tagtctggtgggccgatcacttttgattcgagatcgggag 31207394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 34389076 - 34389043
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||||||||||||||||||||||||||||    
T  34389076 tagtctggtgggccgatcacttttgattcgagat 34389043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 33967337 - 33967369
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||||||||||    
T  33967337 agtctggtgggccgatcacttttgattcgagat 33967369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 32066366 - 32066327
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  32066366 tagtctggtgggccgatcacttttgattcgaaatcgggag 32066327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 15821449 - 15821411
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  15821449 agtctggtgggctgatcacttttgattcgagatcgggag 15821411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 15906697 - 15906735
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  15906697 agtctggtgggccgatcacatttgattcgagatcgggag 15906735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 31179896 - 31179859
Alignment:
Q  266 tctggtgggccgatcacttttgattcgagattgggagc 303  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  31179896 tctggtgggccgatcacttttgatctgagattgggagc 31179859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 36630848 - 36630880
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||||||||||||||||| |||||||||    
T  36630848 agtctggtgggccgatcacttttaattcgagat 36630880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 331 - 431
Target Start/End: Original strand, 14328168 - 14328268
Alignment:
Q  331 tttcggctttttggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttgatgcaacatatcatcgttggttgcttttttgatct 430  Q
    |||||||| ||| | ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |  ||||||||||| ||||    
T  14328168 tttcggctgttttgtggctcctccgacttatcggttgttgagtggtgggtgaatatgatcgtttgatgcaacatatcatcttcagttgctttttttatct 14328267  T
Q  431 c 431  Q
    |    
T  14328268 c 14328268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 211 - 431
Target Start/End: Complemental strand, 44888443 - 44888227
Alignment:
Q  211 gtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagctagcta 309  Q
    |||||| ||||||||||| || |||||||||||| | | ||||| | | |||| ||| |||||||||||||| |||| ||||||||||||||||||| |     
T  44888443 gtgtctgctctggtgggtcgtgagttgaggggtgccttattgatttatgtcgggagtttggtgggccgatcattttttattcgagattgggagctagtt- 44888345  T
Q  310 gnnnnnnnnnatgcaagttcttttcggctttttggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttgatgcaacatatcat 409  Q
              | ||||||||| |  |||||||||| ||||||||||| ||||||   |||||||| |||  |||| |||||||||||||||||| |||||    
T  44888344 ----tttttgacgcaagttctctcaggctttttggtggctcctccgacttatcggaagttgagtgttggacgaatatgatcgtttgatgcaacaaatcat 44888249  T
Q  410 cgttggttgcttttttgatctc 431  Q
    ||| || |||||||||||||||    
T  44888248 cgtcggctgcttttttgatctc 44888227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 4162090 - 4162046
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggagctagct 308  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||    
T  4162090 agtctggtgggccgatcacttttgattcgagatcgggagccagct 4162046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 10524107 - 10524146
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  10524107 tagtctggtgggccgatcacttttgattcgagatcgggag 10524146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 14405209 - 14405247
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  14405209 agtctggtgggccgatcacttttgattcgagatcgggag 14405247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 22885203 - 22885165
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  22885203 agtctggtgggccgatcacttttgattcgagatcgggag 22885165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 33788702 - 33788664
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  33788702 agtctggtgggccgatcgcttttgattcgagattgggag 33788664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 9560913 - 9560816
Alignment:
Q  210 ggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||| ||||||| | | || |||||||||||| | || |||| ||| |||  ||| |||||| |||||||||||||||||||||| |||||||||    
T  9560913 ggtgtctgctctggtagttcgtgagttgaggggtgccttgatgatttgtgtcgaaagtttggtggaccgatcacttttgattcgagatcgggagctag 9560816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 1269494 - 1269526
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||||||||||    
T  1269494 agtctggtgggccgatcacttttgattcgagat 1269526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 39338936 - 39338897
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  39338936 tagtctggtgggccgatcgcttttgattcgagatcgggag 39338897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 7874302 - 7874340
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  7874302 agtctggtgggtcgatcacttttgattcgagatcgggag 7874340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 14106594 - 14106556
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  14106594 agtctggtgggccgatcacttttgattcaagatcgggag 14106556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 15126480 - 15126442
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  15126480 agtctggtgggccgatcatttttgattcgagatcgggag 15126442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 23665479 - 23665442
Alignment:
Q  259 tcggtagtctggtgggccgatcacttttgattcgagat 296  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  23665479 tcgggagtctagtgggccgatcacttttgattcgagat 23665442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 10173648 - 10173616
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    ||||| |||||||||||||||||||||||||||    
T  10173648 agtctagtgggccgatcacttttgattcgagat 10173616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 16959993 - 16960025
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||||||||||| |||||||||||||||    
T  16959993 agtctggtgggccgatcgcttttgattcgagat 16960025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 42048343 - 42048255
Alignment:
Q  208 aaggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgaga 295  Q
    ||||||||| ||||||||| | || ||||||| |||| | ||||||| | | |||| |||| | ||||| |||||||||||||||||||    
T  42048343 aaggtgtctgctctggtggttcgtgagttgagaggtgccttgttgatttctgtcgggagtccgatgggctgatcacttttgattcgaga 42048255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 405
Target Start/End: Complemental strand, 35206831 - 35206629
Alignment:
Q  197 ttgggcaagtgaaggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgaga 295  Q
    |||| ||||| ||||||||| |||||||||||  | |||||||||||  | | || || ||| | || |||||||||||||||||||||||||| |||||    
T  35206831 ttggacaagttaaggtgtctgctctggtgggtcatgagttgaggggtcccttttttatttgtgttgggagtctggtgggccgatcacttttgatccgaga 35206732  T
Q  296 ttgggagctagctagnnnnnnnnnatgcaagttcttttcggctttttggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttg 395  Q
    | ||||||||| |           |||||||||||||||||||||| || ||||||| ||| |||||  | ||| |||||||||||||| ||||| ||||    
T  35206731 tcgggagctagtt------ttttaatgcaagttcttttcggctttt-ggtggctccttcgacttatcagtagtttagtggtgggtgaatctgatcctttg 35206639  T
Q  396 atgcaacata 405  Q
    ||||||||||    
T  35206638 atgcaacata 35206629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 27993653 - 27993564
Alignment:
Q  218 ctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||||| | || |||||||||||||| |  |||| ||| |||| |||||||||| |||||||||||||||||||||| |||||||||    
T  27993653 ctctggtggttcgtgagttgaggggtgtctttatgatttgtgtcgggagtctggtggaccgatcacttttgattcgagatcgggagctag 27993564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 38306271 - 38306310
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38306271 tagtctggtgggccgatcacttttgattcgagattgggag 38306310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 46262244 - 46262147
Alignment:
Q  210 ggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgat--gtgttcggtagtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||||||| ||||  | || |||||||||||| | | |||||  ||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  46262244 ggtgtcttctccggtgattcgtgagttgaggggtgcctttttgattggtgttggg-agtctggtgggccgatcacttttgattcgagatcgggagctag 46262147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 13311848 - 13311888
Alignment:
Q  262 gtagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  13311848 gtagtctggtgggccgatcacttttgattcgagatcgggag 13311888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 6584920 - 6584958
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  6584920 agtctggtgggccgatcacttttgattcgagatcgggag 6584958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 9349760 - 9349798
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  9349760 agtctggtgggccgatcacttttgattcgagatcgggag 9349798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 34389973 - 34390011
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  34389973 agtctggtgggccgatcacttttgattcgagatcgggag 34390011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 38485567 - 38485605
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  38485567 agtctggtgggccgatcacttttgattcgagatcgggag 38485605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 41089818 - 41089780
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  41089818 agtctggtggaccgatcacttttgattcgagattgggag 41089780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 10244195 - 10244231
Alignment:
Q  266 tctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||| |||||    
T  10244195 tctggtgggccgatcacttttgattcgagatcgggag 10244231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 8745166 - 8745201
Alignment:
Q  266 tctggtgggccgatcacttttgattcgagattggga 301  Q
    ||||||||||||||||||||||||||||||| ||||    
T  8745166 tctggtgggccgatcacttttgattcgagatcggga 8745201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 296
Target Start/End: Complemental strand, 17802885 - 17802854
Alignment:
Q  265 gtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||||||||||||||||||||||||||    
T  17802885 gtctggtgggccgatcacttttgattcgagat 17802854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 3478367 - 3478401
Alignment:
Q  268 tggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||| |||||    
T  3478367 tggtgggccgatcacttttgattcgagatcgggag 3478401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 6716806 - 6716768
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  6716806 agtctggttggccgatcacttttgattcgagatcgggag 6716768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 9428177 - 9428143
Alignment:
Q  262 gtagtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||||| |||||||||||||||||||||||    
T  9428177 gtagtctggtgagccgatcacttttgattcgagat 9428143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 42533322 - 42533284
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  42533322 agtctggtgggctgatcacttttgattcgagatcgggag 42533284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 25153226 - 25153263
Alignment:
Q  259 tcggtagtctggtgggccgatcacttttgattcgagat 296  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  25153226 tcgggagtctggtggaccgatcacttttgattcgagat 25153263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 11379199 - 11379159
Alignment:
Q  262 gtagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  11379199 gtagtctggtgagccgatcgcttttgattcgagatcgggag 11379159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 37707480 - 37707393
Alignment:
Q  210 ggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||| ||||||||| | || |||||||||||| | | ||| | ||| |||| |||||||||||||||||||||||||||||||||    
T  37707480 ggtgtctgctctggtggttcgtgagttgaggggtgcctttttgctatgtgtcgggagtctggtgggccgatcacttttgattcgagat 37707393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 40813856 - 40813812
Alignment:
Q  259 tcggtagtctggtgggccgatcacttttgattcgagattgggagc 303  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||    
T  40813856 tcgggagtctggtgggccgatcacttttgattcgagatcgggagc 40813812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 53756767 - 53756809
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  53756767 agtctggtgggccgatcacttttgattcgagatcggaagctag 53756809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 31050732 - 31050700
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||||||||||    
T  31050732 agtctggtgggccgatcacttttgattcgagat 31050700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 39041344 - 39041312
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||||||||||    
T  39041344 agtctggtgggccgatcacttttgattcgagat 39041312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 4305735 - 4305774
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  4305735 tagtctggtggggcgatcacttttgattcgagatcgggag 4305774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 38637303 - 38637264
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  38637303 tagtctggcgggccgatcacttttgattcgagatcgggag 38637264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 39421080 - 39421045
Alignment:
Q  267 ctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||| |||||    
T  39421080 ctggtgggccgatcacttttgattcgagatcgggag 39421045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 2061808 - 2061774
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattg 298  Q
    |||||||||||| ||||||||||||||||||||||    
T  2061808 agtctggtgggctgatcacttttgattcgagattg 2061774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 25753183 - 25753221
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  25753183 agtctggtggggcgatcacttttgattcgagatcgggag 25753221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 8255038 - 8255070
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||| ||||||    
T  8255038 agtctggtgggccgatcacttttgatccgagat 8255070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 8268456 - 8268488
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||| ||||||    
T  8268456 agtctggtgggccgatcacttttgatccgagat 8268488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 17416573 - 17416537
Alignment:
Q  270 gtgggccgatcacttttgattcgagattgggagctag 306  Q
    |||||||||||||||||||||||||||  ||||||||    
T  17416573 gtgggccgatcacttttgattcgagatcaggagctag 17416537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 21387274 - 21387242
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||| ||||||||||||||||||||||    
T  21387274 agtctggtggaccgatcacttttgattcgagat 21387242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 296
Target Start/End: Original strand, 26474851 - 26474879
Alignment:
Q  268 tggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||||||    
T  26474851 tggtgggccgatcacttttgattcgagat 26474879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 36962685 - 36962653
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||| ||||||||||||||||    
T  36962685 agtctggtgggccgattacttttgattcgagat 36962653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 38929838 - 38929870
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||| ||||||||||||||||||||||||||    
T  38929838 agtctgctgggccgatcacttttgattcgagat 38929870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 46698857 - 46698817
Alignment:
Q  262 gtagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  46698857 gtagtctggtgggccgattgcttttgattcgagatcgggag 46698817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 26534789 - 26534751
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26534789 agtctggtgggccgatcacttttgattcgagattgggag 26534751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 26216089 - 26216051
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  26216089 agtctggtgggccgatcacttttgattcgagatcgggag 26216051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 431
Target Start/End: Original strand, 12129278 - 12129390
Alignment:
Q  320 atgcaagttcttttcggcttttt-ggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttgatgcaacatatcatcgttggttg 418  Q
    |||||||||||||| | |||||| || | |||||| || ||||||   ||||||||||||| || | ||||||||||||||||| ||||||| | |  ||    
T  12129278 atgcaagttcttttagacttttttggtgactcctctgacttatcggaagttgagtggtgggcgattctgatcgtttgatgcaacttatcatcatcgactg 12129377  T
Q  419 cttttttgatctc 431  Q
    ||||||| |||||    
T  12129378 ctttttttatctc 12129390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 7546499 - 7546457
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  7546499 agtctggtggaccgatcacttttgattcgagatcggaagctag 7546457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 16510371 - 16510337
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattg 298  Q
    ||||| |||||||||||||||||||||||||||||    
T  16510371 agtctagtgggccgatcacttttgattcgagattg 16510337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 32935409 - 32935371
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  32935409 agtctggtgggccgatcgcttttgattcgagatcgggag 32935371  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 34105428 - 34105462
Alignment:
Q  268 tggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||| |||||    
T  34105428 tggtgggccgatcacttttgattcgagatcgggag 34105462  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 34092806 - 34092838
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||| |||||||||||||||||||||||    
T  34092806 agtctggtgagccgatcacttttgattcgagat 34092838  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 20710778 - 20710736
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  20710778 agtctggtgggccgatcacttttgattcgagatcgggagctag 20710736  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 17550967 - 17551006
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  17550967 tagtctggtgggccgatcacttttgattcgagatcgggag 17551006  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 34475825 - 34475786
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  34475825 tagtctggtgggccgatcacttttgattcgagatcgggag 34475786  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 14879446 - 14879484
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  14879446 agtctggtgggccgatcacttttgattcgagatcgggag 14879484  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 19176513 - 19176551
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  19176513 agtctggtgggccgatcacttttgattcgagatcgggag 19176551  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 37123397 - 37123431
Alignment:
Q  268 tggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||||||||||    
T  37123397 tggtgggccgatcacttttgattcgagattgggag 37123431  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 14193951 - 14193989
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  14193951 agtctggcggaccgatcacttttgattcgagattgggag 14193989  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 14755335 - 14755297
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  14755335 agtctggtgggccgatcacttttgattcaagatcgggag 14755297  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 40023642 - 40023604
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  40023642 agtctggtggaccgatcacttttgattcgagatcgggag 40023604  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 43012386 - 43012424
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  43012386 agtctggtggcccgatcacttttgattcgagatcgggag 43012424  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 47945717 - 47945755
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  47945717 agtccggtgggccgatcacttttgattcgagatcgggag 47945755  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 3968675 - 3968578
Alignment:
Q  210 ggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||| ||||||||| | || |||||||||||| | || |||| ||| |||| |||||||||| || ||| |||||| ||||||||  ||||||||    
T  3968675 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctag 3968578  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 4000130 - 4000227
Alignment:
Q  210 ggtgtcttctctggtgggttgtaagttgaggggtgtcgtgttgatgtgt-tcggtagtctggtgggccgatcacttttgattcgagattgggagctag 306  Q
    ||||||| ||||||||| | || |||||||||||| | || |||| ||| |||| |||||||||| || ||| |||||| ||||||||  ||||||||    
T  4000130 ggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcgggagtctggtggaccaatcgcttttgcttcgagatcaggagctag 4000227  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 24099397 - 24099368
Alignment:
Q  264 agtctggtgggccgatcacttttgattcga 293  Q
    ||||||||||||||||||||||||||||||    
T  24099397 agtctggtgggccgatcacttttgattcga 24099368  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 2392573 - 2392541
Alignment:
Q  267 ctggtgggccgatcacttttgattcgagattgg 299  Q
    ||||||| |||||||||||||||||||||||||    
T  2392573 ctggtggaccgatcacttttgattcgagattgg 2392541  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 2394320 - 2394288
Alignment:
Q  267 ctggtgggccgatcacttttgattcgagattgg 299  Q
    ||||||| |||||||||||||||||||||||||    
T  2394320 ctggtggaccgatcacttttgattcgagattgg 2394288  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 5556579 - 5556619
Alignment:
Q  262 gtagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  5556579 gtagtctggtggggcgatcgcttttgattcgagatcgggag 5556619  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 23328416 - 23328376
Alignment:
Q  268 tggtgggccgatcacttttgattcgagattgggagctagct 308  Q
    |||||| |||||||||||||||||||||| ||||| |||||    
T  23328416 tggtggaccgatcacttttgattcgagatcgggagttagct 23328376  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 30127267 - 30127311
Alignment:
Q  258 ttcggtagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||| ||||||||| ||||||| ||||||||||||||| |||||    
T  30127267 ttcgggagtctggtgagccgatcgcttttgattcgagatcgggag 30127311  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 45398807 - 45398839
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||| ||||||||||||||||||||||    
T  45398807 agtctggtggaccgatcacttttgattcgagat 45398839  T

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Target: scaffold0224 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 433
Target Start/End: Original strand, 18549 - 18656
Alignment:
Q  326 gttcttttcggctttttggcggctcctccgaattatcgattgttgagtggtgggtgaatttgatcgtttgatgcaacatatcatcgttggttgctttttt 425  Q
    |||||||| ||||| |||  | ||||||||  ||||||  |||||||||||||| || | ||||||||||| || ||  |||||||| || |||||||||    
T  18549 gttcttttaggcttgttgatgtctcctccggcttatcggatgttgagtggtgggcgactctgatcgtttgaagctactcatcatcgtcggctgctttttt 18648  T
Q  426 gatctctg 433  Q
    ||||||||    
T  18649 gatctctg 18656  T

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Target: scaffold0200 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 19394 - 19426
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||||||||||    
T  19394 agtctggtgggccgatcacttttgattcgagat 19426  T

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Target: scaffold0119 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 42208 - 42176
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    |||||||||||||||||||||||||||||||||    
T  42208 agtctggtgggccgatcacttttgattcgagat 42176  T

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Target: scaffold0068 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 35842 - 35803
Alignment:
Q  263 tagtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  35842 tagtctagtgggccgatcacttttgattcgagatcgggag 35803  T

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Target: scaffold1613 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 1087 - 1049
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  1087 agtctggtgggccgatcgcttttgattcgagatcgggag 1049  T

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Target: scaffold0620 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 3841 - 3879
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagattgggag 302  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  3841 agtctggtgggccgatcaattttgattcgagatcgggag 3879  T

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Target: scaffold0620; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 8140 - 8172
Alignment:
Q  264 agtctggtgggccgatcacttttgattcgagat 296  Q
    ||||||||| |||||||||||||||||||||||    
T  8140 agtctggtgagccgatcacttttgattcgagat 8172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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