View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_low_8 (Length: 328)
Name: NF13815_low_8
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10108703 - 10108925
Alignment:
| Q |
1 |
ttttatattagttttattggcagtatcaatcatgaaattttaggatagaatagttgttggctaaggaaaattagaaatttagaatctctcaaccaggtat |
100 |
Q |
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| T |
10108703 |
ttttatattagttttattggcagtatcaatcatgaaattttaggatagaatagttgttggctaaggaaaattagaaatttagaatctctcaactaggtat |
10108802 |
T |
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| Q |
101 |
tttagctcaactttagtatcgtagtcggtccaaagattcgaaactttgagaatattttgtggagtgactaaggtgttaaagacattaagtatgttagttt |
200 |
Q |
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| T |
10108803 |
tctagctcaactttagtctcgtagtcggtccaaagattcgaaactttgagaatattttgtggagtgactaaggtgttaaagacattaagtatgttagttt |
10108902 |
T |
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| Q |
201 |
cctcactttgctttgatgagaat |
223 |
Q |
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| T |
10108903 |
cctcactttgctttgatgagaat |
10108925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 10108954 - 10109017
Alignment:
| Q |
250 |
agataacaattgcaatcgttggtgaataacgataacattatgtcctttggattggtctgatatt |
313 |
Q |
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| T |
10108954 |
agataacaattgcaatcgttggtgaataacgataacattatgtcctttggattggtctgatatt |
10109017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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