View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13815_low_9 (Length: 307)
Name: NF13815_low_9
Description: NF13815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13815_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 55067567 - 55067741
Alignment:
| Q |
1 |
ataagatgcaatttttgttatggtattctctattttccatttcaatatgtctgtttcttataaatttataaacaaacaatctttttctttgttgaatttt |
100 |
Q |
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| T |
55067567 |
ataagatgcaatttttgttgtggtattctctattttccatttctatatgtctgtttcttataaatttataaacaaacaatctttttctttgttcaatttt |
55067666 |
T |
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| Q |
101 |
ttaacctgtatgattatgttagaaacagagtgcaagggatactccaacctaattttagcgtataaataacataaa |
175 |
Q |
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| T |
55067667 |
ttaacctgtatgattatgttagaaacagagtgcaagggatactccaacctaattttagcgtataaataacataaa |
55067741 |
T |
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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 55067752 - 55067832
Alignment:
| Q |
209 |
aatcctaaaatcacacaaacaagaaaaaattaaccaagatccgaaagtctcaaacacatgtgagggtgagtacaccctttg |
289 |
Q |
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| T |
55067752 |
aatcctaaaatcacacaaacaagaaaaaattaaccaagatccgaaagtctcaaacacatgtgagggtgagtacaccctttg |
55067832 |
T |
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