View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13816_high_1 (Length: 1050)
Name: NF13816_high_1
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13816_high_1 |
 | |
|
| [»] scaffold0190 (1 HSPs) |
| | |
|
| [»] scaffold0130 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 9 - 565
Target Start/End: Complemental strand, 7606404 - 7605847
Alignment:
| Q |
9 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcat |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606404 |
gtgagatgaacaaattaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcat |
7606305 |
T |
|
| Q |
109 |
gtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggacat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7606304 |
gtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatat |
7606205 |
T |
|
| Q |
209 |
aaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606204 |
aaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtg |
7606105 |
T |
|
| Q |
309 |
acccacatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttgg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606104 |
acccacatttcatggatgtcgtgaccaactaatgcggcttcaaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttgg |
7606005 |
T |
|
| Q |
409 |
atataactatgaataactttatgacattcaagtctcttttcagtatattttgataaagaagaatgttagggtcacaccctctaacacactccaatggaaa |
508 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7606004 |
atataactatgaataagtgtatgacgttcaagtctctttttagtatattttgataaagaagaatgttagggtcacaccctctaacacactccagtggaaa |
7605905 |
T |
|
| Q |
509 |
cttgccatctcattcac-nnnnnnnaagttacttacctgctgaccagttacacaagtt |
565 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7605904 |
cttgccatctcattcacttttttttaagttacttacctgctgaccagttacacaagtt |
7605847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 651 - 1031
Target Start/End: Complemental strand, 7605761 - 7605381
Alignment:
| Q |
651 |
ttcaacgttgctgcctcctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgagtttcatt |
750 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605761 |
ttcaacgttgctgcctcctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgagtttcatt |
7605662 |
T |
|
| Q |
751 |
tttgttgcnnnnnnnccaaatataaattgtttctcaatattgattctaagcctttggtttctattgcacctacatgttgtcatctacaattgaattctct |
850 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605661 |
tttgttgctttttttccaaatataaattgtttctcaatattgattctaagcctttggtttctattgcacctacatgttgtcatctacaattgaattctct |
7605562 |
T |
|
| Q |
851 |
tttgctatgtattcaaaaatttgtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatattatcaatgacattatttgggagaa |
950 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7605561 |
tttgctatgtattcaaaaatttgtataaacattcatttggtaattcgtttttatttaaattgaaatttggcaatgttatcaatgacattatttgggagaa |
7605462 |
T |
|
| Q |
951 |
tacgatttagatgtagatgtctttttccctcagaagtttgtaaattgtgtttgtcaattggggttaaatcttccatcttaa |
1031 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605461 |
tacgatttagatatagatgtctttttccctcagaagtttgtaaattgtgtttgtcaattggggttaaatcttccatcttaa |
7605381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 7637233 - 7636895
Alignment:
| Q |
11 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---ca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||| || |
|
|
| T |
7637233 |
gagatgaacaagttaattgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaagcttttttaggcttgctaagaaca |
7637134 |
T |
|
| Q |
108 |
tgtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggaca |
207 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||| | |
|
|
| T |
7637133 |
tggtaaaaaataatttcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggata |
7637034 |
T |
|
| Q |
208 |
taaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagt |
307 |
Q |
| |
|
||||||||||||| || | | |||||||| |||||||||||||||||||| ||||||||||| ||||||||| || ||||||||| |||||||| | |
|
|
| T |
7637033 |
taaaataaatggacttattacggtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaat |
7636934 |
T |
|
| Q |
308 |
gacccacatttcatggatgtcgtgaccaactaatgcagc |
346 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
7636933 |
gaccccaatttcatggatgttgtgtccaactaatgcagc |
7636895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 7615418 - 7615083
Alignment:
| Q |
9 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcat |
108 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||| ||| |
|
|
| T |
7615418 |
gtgagatgaacaagttaattgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaagctttgctaggtatcctaacat |
7615319 |
T |
|
| Q |
109 |
gtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggacat |
208 |
Q |
| |
|
| | || |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| || |||||||| ||| | ||||||||||||||| || |
|
|
| T |
7615318 |
ggcaaaaaataatttcatagccattagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatat |
7615219 |
T |
|
| Q |
209 |
aaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtg |
308 |
Q |
| |
|
||| ||||||| || | | || |||||||||||||||||||||||||| || |||||||| |||||| | | || |||||||||||||||||| || |
|
|
| T |
7615218 |
aaaggaaatggacttattacggtttttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatg |
7615119 |
T |
|
| Q |
309 |
acccacatttcatggatgtcgtgaccaactaatgca |
344 |
Q |
| |
|
|||| || ||||||||||| | | |||||||||||| |
|
|
| T |
7615118 |
accctcaattcatggatgttgcgtccaactaatgca |
7615083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 7656092 - 7656446
Alignment:
| Q |
13 |
gatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtcc |
112 |
Q |
| |
|
|||||| ||||||||||||| ||| || |||| || || |||||| | |||||||| ||||| |||||||||| |||| ||||| ||| |||| || | |
|
|
| T |
7656092 |
gatgaataagttaattgctttgcactcgaatgaaaaattaaagaatgattatgagtcatggttgagaaatccaaactttattaggcttgatagcttgagc |
7656191 |
T |
|
| Q |
113 |
aataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggacataaaa |
212 |
Q |
| |
|
| ||| ||||| | ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||| |||||| |
|
|
| T |
7656192 |
actaagaattttttggccattagcagttctccaaagtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaa |
7656291 |
T |
|
| Q |
213 |
taaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgaccc |
312 |
Q |
| |
|
||||||||| || || ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
7656292 |
caaatggaatggtttgtgcctttgctggaatagaagaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcc |
7656391 |
T |
|
| Q |
313 |
acatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgtaaaatcgatttg |
370 |
Q |
| |
|
| ||||||||| | || ||||||||||||| ||||| |||| ||| | |||||| |
|
|
| T |
7656392 |
tgagttcatggatatggt---caactaatgcagcgtcaagatttgaaaacttgatttg |
7656446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 196 - 344
Target Start/End: Complemental strand, 7628669 - 7628521
Alignment:
| Q |
196 |
tcgtagtggacataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggag |
295 |
Q |
| |
|
|||||||||| ||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||| |
|
|
| T |
7628669 |
tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag |
7628570 |
T |
|
| Q |
296 |
gcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgca |
344 |
Q |
| |
|
|||||||||| |||||| || || ||||||| ||| |||||||||||| |
|
|
| T |
7628569 |
gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgca |
7628521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 7633556 - 7633443
Alignment:
| Q |
11 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggtta---agaaatccaagctttgttagggttgctagca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
7633556 |
gagatgaacaagttaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccaggctttgttagggttgctagca |
7633457 |
T |
|
| Q |
108 |
tgtccaataataat |
121 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
7633456 |
tgaccaataataat |
7633443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 7628789 - 7628708
Alignment:
| Q |
9 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctt |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
7628789 |
gtgagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctt |
7628708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 706 - 757
Target Start/End: Original strand, 3620686 - 3620737
Alignment:
| Q |
706 |
cactctcttgtggggttccatctctagttttacttgagtttcatttttgttg |
757 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
3620686 |
cactttcttatggggttccatctctagtttttcttgggtttcatttttgttg |
3620737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 866 - 923
Target Start/End: Original strand, 3620855 - 3620912
Alignment:
| Q |
866 |
aaaatttgtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaa |
923 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
3620855 |
aaaatatgtataaacattcatttggtaattgttttagatttcaattgaaatctggcaa |
3620912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 39097738 - 39097703
Alignment:
| Q |
133 |
tagtagttctccatggtttgatgtttatggtaatga |
168 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39097738 |
tagtagttctccaaggtttgatgtttatggtaatga |
39097703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 39088060 - 39088014
Alignment:
| Q |
134 |
agtagttctccatggtttgatgtttatggtaatgatttcggatgggg |
180 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| || ||||| |
|
|
| T |
39088060 |
agtagttctccaaggtttgatgtttatgataatgattttggttgggg |
39088014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 59 - 497
Target Start/End: Original strand, 8941738 - 8942175
Alignment:
| Q |
59 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttt |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8941738 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt |
8941837 |
T |
|
| Q |
159 |
atggtaatgatttcggatggggaaaacctatagcagttcgtagtggacataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8941838 |
atggtaatgatttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat |
8941936 |
T |
|
| Q |
259 |
tgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgt |
358 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8941937 |
tgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgacccacgtttcatggatgtcgtgaccaaataatgcagcttcaaggtttgt |
8942036 |
T |
|
| Q |
359 |
aaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggatataactatgaataactttatgacattcaagtctcttttcagtatattt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8942037 |
aaaatcgatttgttagcatatttgtccagatgcttaaatttgtattttggatataactatgaataactttatgatgttcaagtctcttttcagtatattt |
8942136 |
T |
|
| Q |
459 |
tgataaagaagaatgttagggtcacaccctctaacacac |
497 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
8942137 |
tgataaagatgaatgctacggtcacaccctctaacacac |
8942175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 667 - 1031
Target Start/End: Original strand, 8942298 - 8942661
Alignment:
| Q |
667 |
cctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgagtttcatttttgttgcnnnnnnnc |
766 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
8942298 |
cctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgcgtttcatttttgttg-tttttttc |
8942396 |
T |
|
| Q |
767 |
caaatataaattgtttctcaatattgattctaagcctttggtttctattgcacctacatgttgtcatctacaattgaattctcttttgctatgtattcaa |
866 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8942397 |
ctgatctaaattgtttctcaatattgattctaagccttgggtttctattgcacctacatgctgtcatctacaattgaattctcttttgctatgtattcag |
8942496 |
T |
|
| Q |
867 |
aaatttgtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatattatcaatgacattatttgggagaatacgatttagatgtag |
966 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||| ||| |
|
|
| T |
8942497 |
aaatttgtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatgttatcaatggcattatttggaagaataagatttagatatag |
8942596 |
T |
|
| Q |
967 |
atgtctttttccctcagaagtttgtaaattgtgtttgtcaattggggttaaatcttccatcttaa |
1031 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8942597 |
atgtctttttccctcaaaagtttgtaatttgtgtttgtcaattggggttaaatcttccattttaa |
8942661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 8936052 - 8936378
Alignment:
| Q |
9 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcat |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
8936052 |
gtgagatgaacaagttaattgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaagcttt---ag------taacat |
8936142 |
T |
|
| Q |
109 |
gtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggacat |
208 |
Q |
| |
|
| | || || ||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||| |||| ||||| || |
|
|
| T |
8936143 |
gccaaaaaagaatttcatagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatat |
8936242 |
T |
|
| Q |
209 |
aaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtg |
308 |
Q |
| |
|
||| ||||||| || | | |||||||| |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||| || |
|
|
| T |
8936243 |
aaagcaaatggacttattacagtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatg |
8936342 |
T |
|
| Q |
309 |
acccacatttcatggatgtcgtgaccaactaatgca |
344 |
Q |
| |
|
|||| || ||||||||||| | | |||||||||||| |
|
|
| T |
8936343 |
accctcaattcatggatgttgcgtccaactaatgca |
8936378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 8913546 - 8913877
Alignment:
| Q |
11 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---ca |
107 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
8913546 |
gagatgaacaagttaattgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgttaggcttgctaagaaca |
8913645 |
T |
|
| Q |
108 |
tgtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggaca |
207 |
Q |
| |
|
|| || | ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| | ||||||||||||||| | |
|
|
| T |
8913646 |
tggtaaaaactaatttcatatccattagtagttctccatagtttgatgtttatggtaatgat-------ggggaaagcctgtggcagttcgtagtggata |
8913738 |
T |
|
| Q |
208 |
taaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagt |
307 |
Q |
| |
|
||||||||||||| || | | ||||||| |||||||||||||||| ||| ||||||||||| ||||||||| || ||||||||| |||||||| | |
|
|
| T |
8913739 |
taaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaat |
8913838 |
T |
|
| Q |
308 |
gacccacatttcatggatgtcgtgaccaactaatgcagc |
346 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
8913839 |
gaccccaatttcatggatgttgtgtccaactaatgcagc |
8913877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 8919071 - 8919184
Alignment:
| Q |
11 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggtt---aagaaatccaagctttgttagggttgctagca |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
8919071 |
gagatgaacaaattaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccagactttgttagggttgctagca |
8919170 |
T |
|
| Q |
108 |
tgtccaataataat |
121 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
8919171 |
tgaccaataataat |
8919184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 8938828 - 8938884
Alignment:
| Q |
9 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatg |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8938828 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatg |
8938884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 521
Target Start/End: Complemental strand, 40670206 - 40670148
Alignment:
| Q |
463 |
aaagaagaatgttagggtcacaccctctaacacactccaatggaaacttgccatctcat |
521 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
40670206 |
aaagaggaatgatagggtcacaccctctaacacactcaaattataacttgccatctcat |
40670148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 469 - 503
Target Start/End: Complemental strand, 32779876 - 32779842
Alignment:
| Q |
469 |
gaatgttagggtcacaccctctaacacactccaat |
503 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32779876 |
gaatgctagggtcacaccctctaacacactccaat |
32779842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 773 - 1027
Target Start/End: Original strand, 38714859 - 38715112
Alignment:
| Q |
773 |
taaattgtttctcaatattgattctaagcctttggtttctattgcacctacatgttgtcatctacaattgaattctcttttgctatgtattcaaaaattt |
872 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||||||||||||||||| || ||||||| |||||||| |||||||||||||||||| |||||| |
|
|
| T |
38714859 |
taaattgtttttcaatattgattctaagcctg-gatttctattgcacctacatgctgccatctacgattgaattttcttttgctatgtattcagaaattt |
38714957 |
T |
|
| Q |
873 |
gtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatattatcaatgacattatttgggagaatacgatttagatgtagatgtct |
972 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38714958 |
gtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatattatcaatggcattatttgggagaatacgatttagatatagatgtct |
38715057 |
T |
|
| Q |
973 |
ttttccctcagaagtttgtaaattgtgtttgtcaattggggttaaatcttccatc |
1027 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38715058 |
tttttcctcagaagtttgtaaattgtgtttgtcaattggagttaaatcttccatc |
38715112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 703 - 758
Target Start/End: Original strand, 38714774 - 38714829
Alignment:
| Q |
703 |
tcacactctcttgtggggttccatctctagttttacttgagtttcatttttgttgc |
758 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
38714774 |
tcacactctcttgtggggttctatctttagttttacttgagtttcatttttgttgc |
38714829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 32909769 - 32909738
Alignment:
| Q |
469 |
gaatgttagggtcacaccctctaacacactcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32909769 |
gaatgttagggtcacaccctctaacacactcc |
32909738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 463 - 497
Target Start/End: Original strand, 32909295 - 32909329
Alignment:
| Q |
463 |
aaagaagaatgttagggtcacaccctctaacacac |
497 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32909295 |
aaagatgaatgttagggtcacaccctctaacacac |
32909329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 6e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 146 - 327
Target Start/End: Original strand, 40147453 - 40147634
Alignment:
| Q |
146 |
tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggacataaaataaatggaattgtaaatgtatttgctggaatag |
245 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||| | |||||||| |||||| ||||||||| |||||| | | |||||||||||||| || |
|
|
| T |
40147453 |
tggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaag |
40147552 |
T |
|
| Q |
246 |
aagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgt |
327 |
Q |
| |
|
|||||||||| || ||| ||||||| ||||||||| ||||| |||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
40147553 |
aagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgt |
40147634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 146 - 305
Target Start/End: Complemental strand, 8102486 - 8102327
Alignment:
| Q |
146 |
tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggacataaaataaatggaattgtaaatgtatttgctggaatag |
245 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||||||| | |||||||| |||||| ||||| || |||| | | ||||||||||||||||| |
|
|
| T |
8102486 |
tggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatag |
8102387 |
T |
|
| Q |
246 |
aagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaa |
305 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8102386 |
aagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa |
8102327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 46556416 - 46556450
Alignment:
| Q |
469 |
gaatgttagggtcacaccctctaacacactccaat |
503 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
46556416 |
gaatgttaggatcacaccctctaacacactccaat |
46556450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 137 - 341
Target Start/End: Complemental strand, 6500539 - 6500335
Alignment:
| Q |
137 |
agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggacataaaataaatggaattgtaaatgtatttg |
236 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||| |||||||| ||||| | ||| |||| |||| | |||||||| |||| || || | |||||||| |
|
|
| T |
6500539 |
agttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttg |
6500440 |
T |
|
| Q |
237 |
ctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaa |
336 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||| ||||||||||||||| |||||| |||||| | |||||| |||||||||||| ||| |||| |
|
|
| T |
6500439 |
ctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtccaa |
6500340 |
T |
|
| Q |
337 |
ctaat |
341 |
Q |
| |
|
||||| |
|
|
| T |
6500339 |
ctaat |
6500335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 11968861 - 11968807
Alignment:
| Q |
243 |
tagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggc |
297 |
Q |
| |
|
|||||||||||||||| ||| || |||| ||||||||||||||| |||||||||| |
|
|
| T |
11968861 |
tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggc |
11968807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 4501 - 4452
Alignment:
| Q |
138 |
gttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct |
187 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4501 |
gttctccttggtttgatgtttatggtaatgattttggttggggaaaacct |
4452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 15745016 - 15745070
Alignment:
| Q |
133 |
tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct |
187 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
15745016 |
tagtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaacct |
15745070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 470 - 503
Target Start/End: Complemental strand, 27710087 - 27710054
Alignment:
| Q |
470 |
aatgttagggtcacaccctctaacacactccaat |
503 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
27710087 |
aatgctagggtcacaccctctaacacactccaat |
27710054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 466 - 503
Target Start/End: Complemental strand, 25290 - 25253
Alignment:
| Q |
466 |
gaagaatgttagggtcacaccctctaacacactccaat |
503 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
25290 |
gaagaatgctagggtcacaccctctaacacattccaat |
25253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 470 - 503
Target Start/End: Complemental strand, 43059472 - 43059439
Alignment:
| Q |
470 |
aatgttagggtcacaccctctaacacactccaat |
503 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
43059472 |
aatgttagggtcacaccctccaacacactccaat |
43059439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University