View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13816_high_11 (Length: 202)
Name: NF13816_high_11
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13816_high_11 |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: scaffold0650 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 3066 - 3233
Alignment:
| Q |
18 |
caaaggctgggactttgagattaggggctatttccctgacaagcattgcagcattgttgatactagaggcaacatagtagcacaggtacccaatgtttat |
117 |
Q |
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| T |
3066 |
caaaagctgggactttgagattaggggctatttccctgacaagcattgcagcattgttgatactagaggcaacatagtagcacaggtacccaatatttat |
3165 |
T |
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| Q |
118 |
gtgtataataataataattgtgactttattagatatataaactacagagatttactatttacattctttc |
187 |
Q |
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| T |
3166 |
gtgtgtaataataataattgtgactttatt--atatataaactacagagatttactatttacattctttc |
3233 |
T |
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