View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13816_high_2 (Length: 622)
Name: NF13816_high_2
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13816_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 5 - 606
Target Start/End: Complemental strand, 38483934 - 38483333
Alignment:
| Q |
5 |
agcagaacctgtgaatcgcgttcctccatcaccgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaaca |
104 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483934 |
agcagaacctgcaaatcgcgttcctccatcaccgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaaca |
38483835 |
T |
|
| Q |
105 |
tcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatttccatcgaaaaaactactccc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38483834 |
tcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacccgtcttcccaacacgatttccatcgaaaaaactactccc |
38483735 |
T |
|
| Q |
205 |
gatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatcataatttctccatctcgtatgtggttccgttcca |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38483734 |
aatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatcataatttctccatcttgtatgtggttccgttcca |
38483635 |
T |
|
| Q |
305 |
ttaccactcctaatctcagcctcaaacttcaccattttataaatcggcttcacaacatcgtttaaaaaaccatattgcgaatgaaagaacggttcataat |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483634 |
ttaccactcctaatctcagcctcaaacttcaccattttataaatcggcttcacaacatcgtttaaaaaaccatattgcgaatgaaagaacggttcataat |
38483535 |
T |
|
| Q |
405 |
cataatgatcattgtttttcttactccgcaagattttatttaaatcatttgccatatgatgaaaaatatagcaaatacattcaggaataaaacgtaaatt |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483534 |
cataatgatcattgtttttcttactccgcaagattttatttaaatcatttgtcatatgatgaaaaatatagcaaatacattcaggaataaaacgtaaatt |
38483435 |
T |
|
| Q |
505 |
cgcagactccccccaaatgagaagataaagagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgagacacttgac |
604 |
Q |
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|
|||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483434 |
cgcagattccccccaaataaggagataaagagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgagacacttgac |
38483335 |
T |
|
| Q |
605 |
tt |
606 |
Q |
| |
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|| |
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| T |
38483334 |
tt |
38483333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 3682910 - 3682860
Alignment:
| Q |
233 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccat |
283 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
3682910 |
aaacacctcctactccaaaaatactcatttatatcatcataattcctccat |
3682860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 84 - 282
Target Start/End: Complemental strand, 30118257 - 30118047
Alignment:
| Q |
84 |
cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatt |
183 |
Q |
| |
|
||||||||||||| | |||||| | ||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| |||||| | || |
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| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaacatgttt |
30118158 |
T |
|
| Q |
184 |
tccatcg------------aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatca |
271 |
Q |
| |
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|| | |||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
30118157 |
ccccttaccaacagtagtaaaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaatactcattaatatcatca |
30118058 |
T |
|
| Q |
272 |
taatttctcca |
282 |
Q |
| |
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||||||||||| |
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|
| T |
30118057 |
taatttctcca |
30118047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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