View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13816_high_6 (Length: 326)
Name: NF13816_high_6
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13816_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 82 - 316
Target Start/End: Complemental strand, 38721180 - 38720940
Alignment:
| Q |
82 |
gcctaggggtagacccccgggatctaagaacaagcctaaaccacctgtgaatattgatca------ggacaacaatatgaaaatgatttacattgagatc |
175 |
Q |
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| T |
38721180 |
gcctaggggtagacccccgggatctaagaacaagcctaaaccacctgtgaatattgaggaaaacatggacaacaatatgaaaatgatttacattgagatc |
38721081 |
T |
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| Q |
176 |
ccctctggaaaagatattgtgggggaaataatcaattgtgctcagcgttatcaagctagcataacagtgtcgaggggttacggtcttgtcaccaatgtta |
275 |
Q |
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| T |
38721080 |
ccctctggaaaagatattgtgggggaaataatcaattgtgctcatcgttatcaagctagcataacagtgtcgaggggttacggtcttgtcaccaatgtta |
38720981 |
T |
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| Q |
276 |
cccttctcaatcctgaaactcatttcccaactcctcctatg |
316 |
Q |
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| T |
38720980 |
cccttctcaatcctaaaactcatttcccaactcctcctatg |
38720940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 38721271 - 38721217
Alignment:
| Q |
18 |
gaaacatggtctctcacattaccaccac---caacaacaacaatgtcacattgat |
69 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
38721271 |
gaaacatggtctctcacattaccaccacaaacaacaacaacaatgacacattgat |
38721217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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