View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13816_high_9 (Length: 245)
Name: NF13816_high_9
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13816_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 44607595 - 44607824
Alignment:
| Q |
17 |
acaataagcaactaaataaacaggaaatatgtagaacatatgagaacatttgttagtatatgagggaaggtttcaccgagttgtattattacattga-ct |
115 |
Q |
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| T |
44607595 |
acaataagcaactaaataaacaggaaatatgtagaacatatgagaacatttgttagtatatgagggaaggtctcaccgagttgtattattacattaaact |
44607694 |
T |
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| Q |
116 |
taaatgcaatcacacaaaccaattctaaattttttagatagattagcctaacttttaccttctctctaaatttcttcttattattctttcattgaaaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44607695 |
taaatgcaatcacacaaaccaattctaaattttttagatagattagcctaacttttaccttctctctaaatttcttcttattattctttcattgaaaatg |
44607794 |
T |
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| Q |
216 |
agtcgcatctttttattttatttatctttt |
245 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
44607795 |
agtcacatctttttattttatttatctttt |
44607824 |
T |
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