View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13816_low_10 (Length: 268)
Name: NF13816_low_10
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13816_low_10 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 2720314 - 2720060
Alignment:
| Q |
17 |
agatggaaaggatattaactcccttccaccgccgtgtttgtggtagatgccaccactgcgctagaaagttgactacttttagtttatgtctcaagttatt |
116 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2720314 |
agatggagaggatattaactctcttccaccgtcgtgtttgtggaagatgccaccactgcgccagaaagttgactacttttaatttatgtctcaagttatt |
2720215 |
T |
|
| Q |
117 |
tttagatttaattttgatactt---cnnnnnnnntattcactacatttggtatactttacaaacttagacacttacatgnnnnnnnnnnnnnnnnnngat |
213 |
Q |
| |
|
| ||||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
2720214 |
tatagatttgactttgatacttaaaaaaaaaaaaaattcactacatttggtatactatacaaacttagacacttacatatttttttcattttattttaat |
2720115 |
T |
|
| Q |
214 |
ctcttaaattataaacagtagataatttgatcccttaaataacaaatattagaca |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
2720114 |
ctcttaaattataaacagtagataatttgatcccttaaataccaaatagtagaca |
2720060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University