View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13816_low_12 (Length: 219)

Name: NF13816_low_12
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13816_low_12
NF13816_low_12
[»] chr2 (9 HSPs)
chr2 (92-190)||(31317871-31317969)
chr2 (85-196)||(31253338-31253449)
chr2 (109-202)||(31421406-31421499)
chr2 (99-169)||(31280655-31280725)
chr2 (99-167)||(31290927-31290995)
chr2 (99-168)||(31358242-31358311)
chr2 (99-157)||(31373603-31373661)
chr2 (99-168)||(31384164-31384233)
chr2 (99-168)||(31304734-31304803)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 31317969 - 31317871
Alignment:
Q  92 gttgctaacatgatcttctcaacccagcctcatactccctttatataaattgtggtggaaagcaagcaatagtcaacggaaagagttattatggtgatt 190  Q
    |||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  31317969 gttgctgacatgatctgcttaacccagcctcatacaccctttatataaattgtggtggaaagcaagtgatagtcaacggaaaaagttattatggtgatt 31317871  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 31253449 - 31253338
Alignment:
Q  85 ttttaatgttgctaacatgatcttctcaacccagcctcatactccctttatataaattgtggtggaaagcaagcaatagtcaacggaaagagttattatg 184  Q
    |||||| |||||| ||||| |||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||  ||| |||||| |||    
T  31253449 ttttaaagttgctcacatgttcttctcaacccagccttgtactccctttttataaattgtggtggaaagcaagcaatagtcaacaaaaaaagttatgatg 31253350  T
Q  185 gtgatttagatt 196  Q
     ||||| |||||    
T  31253349 atgattcagatt 31253338  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 31421406 - 31421499
Alignment:
Q  109 ctcaacccagcctcatactccctttatataaattgtggtggaaagcaagcaatagtcaacggaaagagttattatggtgatttagatttacctg 202  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||  ||||||||| |||||||||||    
T  31421406 ctcaacccagccgcaaactctctttatataaattgtggtggaaagcaagcaatagtcgacggaaaaagttacgatggtgattcagatttacctg 31421499  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 31280725 - 31280655
Alignment:
Q  99 acatgatcttctcaacccagcctcatactccctttatataaattgtggtggaaagcaagcaatagtcaacg 169  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  31280725 acatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaagcaagaaacagtcaacg 31280655  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 31290995 - 31290927
Alignment:
Q  99 acatgatcttctcaacccagcctcatactccctttatataaattgtggtggaaagcaagcaatagtcaa 167  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  31290995 acatgatcttctcaacccagccttgtactccctttatataaattgtggtggaaagcatgcaatagtcaa 31290927  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 31358311 - 31358242
Alignment:
Q  99 acatgatcttctcaacccagcctcatactccctttatataaattgtggtggaaagcaagcaatagtcaac 168  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||    
T  31358311 acatgatctgctcaacccagcctcatactccctttatataaattgtggtggaagtcgagcaaaagtcaac 31358242  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 31373661 - 31373603
Alignment:
Q  99 acatgatcttctcaacccagcctcatactccctttatataaattgtggtggaaagcaag 157  Q
    ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31373661 acatgatttgctcaacccagccgcatactccctttatataaattgtggtggaaagcaag 31373603  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 31384233 - 31384164
Alignment:
Q  99 acatgatcttctcaacccagcctcatactccctttatataaattgtggtggaaagcaagcaatagtcaac 168  Q
    |||||||||| |||||||||| || ||||||||| |||||||||||||||||||||||| || |||||||    
T  31384233 acatgatcttatcaacccagcgtcttactcccttcatataaattgtggtggaaagcaagaaagagtcaac 31384164  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 31304803 - 31304734
Alignment:
Q  99 acatgatcttctcaacccagcctcatactccctttatataaattgtggtggaaagcaagcaatagtcaac 168  Q
    ||||||||  ||||||||||||||| | || ||||||||||||||||||||||| |||| || |||||||    
T  31304803 acatgatccgctcaacccagcctcaaaatctctttatataaattgtggtggaaatcaagaaacagtcaac 31304734  T

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