View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13816_low_3 (Length: 490)
Name: NF13816_low_3
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13816_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 2720065 - 2719600
Alignment:
| Q |
1 |
tagacactaataaaatccttccaaaatattagacagtaacaaaaattattatagtgtctgttgtttctaaa------gatcaaaataaaactaaagaaat |
94 |
Q |
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| T |
2720065 |
tagacactaatgaaatccttccaaaatattagacactaacaaaaattattatagtgtctgtcgtttctaaattaagagatcaaaacaaaactaaagaaat |
2719966 |
T |
|
| Q |
95 |
tcaaa-actatcatttatattttaatagactaaaacagaaacaaaaagatttaaggaggcaaataaagcataaaaataatttaagcatatcatgattttg |
193 |
Q |
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| T |
2719965 |
tctaagactaacatatatattttaatagactaaaatagaaacaaaaagatttcaggaga-aaataaatcataaaaatagtttaagcatatcatgattttg |
2719867 |
T |
|
| Q |
194 |
tgtgttttgtagagaagatgatagagagtctttttatggtggtgatttgtggtggtcaagatctaacagaaatgtggctgatataatatacaaagaggaa |
293 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||| ||||| |
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| T |
2719866 |
tgtgttttgtagagaagatgatagag--tctttttatgatggtg----------gtcaagatctaacaaaaatgtggctgatataatataaaaa-aggaa |
2719780 |
T |
|
| Q |
294 |
tttgtttgttgattcattgagtggagaacatagagtatatgatgagagggttttatttgtggtgacagtgaggccactagaggccgatttgcgaccacaa |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2719779 |
tttgtttgttgattcattgagtggagaacatagagtat--gatgagagggttttatttgtggtgacagtgaggccactcgaggccgatttgcgaccacaa |
2719682 |
T |
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| Q |
394 |
agaatggtggtagctagggtttgcaaagagaaaacagagagacaaaaaggtgattttattgattcatttacaaagagaaaat |
475 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2719681 |
agaatggtggtagctaaggtttgcaaagagaaaagagagagacaaaaaggtgattttattgattcatttacaaacagaaaat |
2719600 |
T |
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