View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13816_low_4 (Length: 451)
Name: NF13816_low_4
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13816_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 196 - 435
Target Start/End: Original strand, 48976096 - 48976340
Alignment:
| Q |
196 |
ttcggagccattattagcaatgacggccttgcaaataccatcgactcaataat---gtcagtagccactttatcacaacccctcaaattgt--tctctct |
290 |
Q |
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| T |
48976096 |
ttcggagccattattcgcaatgacggccttgcaaataccatcgactcaataataatgttagtagccactttattacaaccccttaaattctgatctctct |
48976195 |
T |
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| Q |
291 |
caattgtgtgcaattttctactaccctactaatgcccaacactttcacaacgcattgggtttcaaaataagtcgtggattgaattgggcagcgagaaaat |
390 |
Q |
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| T |
48976196 |
caattgtgtgcaattttctactaccctactaatgcccaacactttcacagcgcattgtgtttcaaaataagtcgtggattgaattgggccgcgagaaaat |
48976295 |
T |
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| Q |
391 |
tgcgaggaaccgaattgggtttcactgtaattacaccgaaaaatc |
435 |
Q |
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| T |
48976296 |
tgcgaggaaccgaattgggtttcactataattacaccgaaaaatc |
48976340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 48975527 - 48975725
Alignment:
| Q |
6 |
agtgagaagaaaatacaacaaatctaagttgacattttcaaagaaaaaaccaagaagtaactcctaaaacataaatctctcacctacttttatgagttta |
105 |
Q |
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| T |
48975527 |
agtgacaagaaaatacaacaaatctaagttgacattatcaaagaaaaaaccaagaagtaactcctaaaacataaatctctcaccaacttttatgagttca |
48975626 |
T |
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| Q |
106 |
aacttgatcagagcccttacaacatactagcaaacataacatccacaacccaagaagagtttccgcttgctaaaataagaaagaaaatcattcggagcca |
205 |
Q |
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| T |
48975627 |
aacttgatcagagcccttacaacatactagcaaacatgatat-cgtgacccaaaaagagtttccgcttgctgaaatagcaaagaaaatctttcggagcca |
48975725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 312 - 435
Target Start/End: Original strand, 32118747 - 32118870
Alignment:
| Q |
312 |
taccctactaatgcccaacactttcacaacgcattgggtttcaaaataagtcgtggattgaattgggcagcgagaaaattgcgaggaaccgaattgggtt |
411 |
Q |
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| T |
32118747 |
taccctactaatgcccaacacattcacagcacattgggtttgaaaataggtcgtggattgaattggtcagcgagaaaattgcgaggaactgaattgggtt |
32118846 |
T |
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| Q |
412 |
tcactgtaattacaccgaaaaatc |
435 |
Q |
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| T |
32118847 |
taactctaattacactgaaaaatc |
32118870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 32126045 - 32126085
Alignment:
| Q |
385 |
gaaaattgcgaggaaccgaattgggtttcactgtaattaca |
425 |
Q |
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| T |
32126045 |
gaaaattgcgaggaactgaattgggtttcgctctaattaca |
32126085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 6005975 - 6006129
Alignment:
| Q |
18 |
atacaacaaatctaagttgacattttcaaagaaaaaaccaagaagtaactcctaaaacataaatctctcacctacttttatgagtttaaacttgatcaga |
117 |
Q |
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| T |
6005975 |
atacaacaaatctaagttgacattttcaaagaataaatttacaagtaactcatacaacataaacatct----tacaattctgagtttaaacttcagcaga |
6006070 |
T |
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| Q |
118 |
gcccttacaacatactagcaaacataacatccacaacccaagaagagtttccgcttgct |
176 |
Q |
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| T |
6006071 |
gcagctccaaaatactagcaaacaaggcatccatgacgcaagaagagttttcgcttgct |
6006129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 553366 - 553419
Alignment:
| Q |
258 |
cactttatcacaacccctcaaattgttctctctcaattgtgtgcaattttctac |
311 |
Q |
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| T |
553366 |
cactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctac |
553419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 1545660 - 1545709
Alignment:
| Q |
258 |
cactttatcacaacccctcaaattgttctctctcaattgtgtgcaatttt |
307 |
Q |
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| T |
1545660 |
cactttatcacaacccctcaaattgatcactcttagttgtgtgcagtttt |
1545709 |
T |
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