View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13816_low_6 (Length: 377)
Name: NF13816_low_6
Description: NF13816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13816_low_6 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 54291425 - 54291062
Alignment:
| Q |
8 |
acctgtgacaaatatgttcctgcaacagaaccatatcccacgtatccaccatatatcttcacaatcattcagaaccttaacagcaacccttgtctatccc |
107 |
Q |
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| T |
54291425 |
acctgtaacaaatatgttcctacaacagaaccatatcccacgtatccaccatatatcttcacaatcattcagcaccttaacagcaacccttgtctatccc |
54291326 |
T |
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| Q |
108 |
acaaaaacaataagcacagttatgttcttatttccattcaatccttgaatcataaaaatctgagatctgctaaagtgtgcttgagggtgataccactttc |
207 |
Q |
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| T |
54291325 |
acaaaaacaatgagcacagttatgttcttatttccattcaatccttgaatcataaaaatctgagatctgctaaagtgtgcttg--------accactttc |
54291234 |
T |
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| Q |
208 |
ataaatccgacacaatcaatcaat------------------ttgtatacaaggtaatatcccaatcatgtacctcttgagacaacaagaaaaacaatta |
289 |
Q |
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| T |
54291233 |
ataaatccgacacaatcaatcaatttgacaagccaccttaccttgtatacaaggtaatatcccaatcatgtacctcttgagacaacaagaaaaacaatta |
54291134 |
T |
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| Q |
290 |
attacattcttccaatgggaagaatgttttccttgtatattattatcagtgtagtaggacccccttctttat |
361 |
Q |
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| T |
54291133 |
attacattcttccaatgggaagaatgttttccttgtatattattatccgtgtagtaggacccccttctttat |
54291062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 9593564 - 9593629
Alignment:
| Q |
273 |
aacaagaaaaacaattaattac--attcttccaatgggaagaatgttttccttgtatattattatc |
336 |
Q |
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| T |
9593564 |
aacaaggaaaataactaattacttattcctccaattggaagaatgttttccttgtatattaatatc |
9593629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 9602366 - 9602426
Alignment:
| Q |
273 |
aacaagaaaaacaattaattac--attcttccaatgggaagaatgttttccttgtatatta |
331 |
Q |
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| T |
9602366 |
aacaagaaaaataactaattacttattcctccgattggaagaatgttttccttgtatatta |
9602426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 42446648 - 42446536
Alignment:
| Q |
252 |
caatcatgtacctcttga-gacaacaagaaaaacaattaattac--attcttccaatgggaagaatgttttccttgtatattattatcagtgtagtagga |
348 |
Q |
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| T |
42446648 |
caatcatatacctcttggtgaaaacaagaaaaacaattaattaattattcctccaattggaagaatgttttccttgtatattattacccgagcagtagga |
42446549 |
T |
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| Q |
349 |
cccccttctttat |
361 |
Q |
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| T |
42446548 |
ccccctcctttat |
42446536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 24416529 - 24416600
Alignment:
| Q |
70 |
aatcattcagaaccttaacagcaacccttgtctatcccacaaaaacaataagcacagttatgttcttatttc |
141 |
Q |
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| T |
24416529 |
aatcattaagaaccataacagcaacccttgtctctaccacaaacacaatcagcacaattattttattatttc |
24416600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 29145607 - 29145521
Alignment:
| Q |
252 |
caatcatgtacctcttga-gacaacaagaaaaacaattaattacattct--tccaatgggaagaatgttttccttgtatattattat |
335 |
Q |
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| T |
29145607 |
caatcatatacctcttggtgataacaagaaaaacaattagctacttgctcctccaattggaagaatgtattccttgtatattattat |
29145521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 29131568 - 29131532
Alignment:
| Q |
300 |
tccaatgggaagaatgttttccttgtatattattatc |
336 |
Q |
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| T |
29131568 |
tccaattggaagaatgttatccttgtatattattatc |
29131532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 33234 - 33313
Alignment:
| Q |
252 |
caatcatgtacctcttga-gacaacaagaaaaacaattaattac--attcttccaatgggaagaatgttttccttgtata |
328 |
Q |
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| T |
33234 |
caatcatatacctcttggtgaaaacatgaaaaataattaattacttattccttcaatggcaagaatgttttccttgtata |
33313 |
T |
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