View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13816_low_8 (Length: 316)

Name: NF13816_low_8

Description: NF13816

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13816_low_8

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 163; E-Value: 5e-87

Query Start/End: Original strand, 6 - 180

Target Start/End: Complemental strand, 38186993 - 38186819

Alignment:

Q	6	tgaataaacacaattcattttgagccctaatcattgaattggtgtttgaatttcaaccttcatggccttgattctcataatcgcttctttcattttcctt	105	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38186993	tgaataaaaacaattcattttgagcactaatcattgaattggtgtttcaatttcaaccttcatggccttgattctcataatcgcttctttcattttcctt	38186894	T

Q	106	tggattatttctctatgcaaaattttccttctcccccgtacccctttcaccaaacattttaccctcgatggtaag	180	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38186893	tggattatttctctatgcaaaattttccttctcccccgtacccctttcaccaaacattttaccctcgatggtaag	38186819	T

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Target: chr4; HSP #2

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 265 - 306

Target Start/End: Complemental strand, 38186733 - 38186692

Alignment:

Q	265	ggaagagaaatgtcttgctggttattgctcaccctgatgatg	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	38186733	ggaagagaaatgtcttgctggttattgctcaccctgacgatg	38186692	T

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