View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13817_high_10 (Length: 276)
Name: NF13817_high_10
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13817_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 1372911 - 1373159
Alignment:
| Q |
12 |
atagggcgctcaagaaccaaatagggtggaaaaagtaatggctaatattgattgccccagtaaggagccagagcctgaaaaaagtaccatacatgattga |
111 |
Q |
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| T |
1372911 |
atagggcgctcaagaaccaaatagggtggaaaaagtaatggctaatattgattgccccagtaaggagccagagcctgaaaaaagtaccatacatgattga |
1373010 |
T |
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| Q |
112 |
tatttgtggaggcattaatagtcgcaaaactacacgtggcaatttcatattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttg |
211 |
Q |
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| T |
1373011 |
tatttgtggaggcattaatagtcacaaaactacacgtggcaatttcatattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttg |
1373110 |
T |
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| Q |
212 |
atatggcagcaaagtttatcatattcacaaccaacaaaatggtattatg |
260 |
Q |
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| T |
1373111 |
atatggcagcaaagtttatcatattcacaaccaacaaaatggtattatg |
1373159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 1383248 - 1383418
Alignment:
| Q |
71 |
gtaaggagccagagcctgaaaaaagtaccatacatgattgatatttgtggaggcattaatagtcgcaaaactacacgtggcaatttcatattggtggcta |
170 |
Q |
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| T |
1383248 |
gtaaggagccaatgcctgaaaaaagtaccatagatgattgatatttgtggaggcattaatagtcacaaaactacacgtggcaatttcatattggtggcta |
1383347 |
T |
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| Q |
171 |
atgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaa |
241 |
Q |
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| T |
1383348 |
atgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaa |
1383418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 1389353 - 1389523
Alignment:
| Q |
71 |
gtaaggagccagagcctgaaaaaagtaccatacatgattgatatttgtggaggcattaatagtcgcaaaactacacgtggcaatttcatattggtggcta |
170 |
Q |
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| T |
1389353 |
gtaaggagccaatgcctgaaaaaagtaccatagatgattgatatttgtggaggcattaatagtcacaaaactacacgtggcaatttcatattggtggcta |
1389452 |
T |
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| Q |
171 |
atgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaa |
241 |
Q |
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| T |
1389453 |
atgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaa |
1389523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 1357650 - 1357800
Alignment:
| Q |
111 |
atatttgtggaggcattaatagtcgcaaaactacacgtggcaatttcatattggtggctaatgataaggctagcacaaaaatttcca---ttcctgtgtg |
207 |
Q |
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| T |
1357650 |
atatttatggaagcattaatagtcacacaactacacgtggcaatttcatattggtggctaaagataaggc-accacaaaaatttccaatcttgttgtgtg |
1357748 |
T |
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| Q |
208 |
gttgatatggcagcaaagtttatcatattcacaa-ccaacaaaatggtattatg |
260 |
Q |
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| T |
1357749 |
gtt--aatggctgcaatgtttatcattttcacaatcaaacaaaattgtattatg |
1357800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 1349767 - 1349813
Alignment:
| Q |
169 |
taatgataaggctagcacaaaaatttccattcctgtgtggttgatat |
215 |
Q |
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| T |
1349767 |
taatgataaggctaacacacaaatttccattcttgtgtggttaatat |
1349813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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