View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13817_high_13 (Length: 239)
Name: NF13817_high_13
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13817_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 12492698 - 12492476
Alignment:
| Q |
15 |
cttttgtcgcgaaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtgactcttcacaattaaatcttctcttgcttttgc |
114 |
Q |
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| T |
12492698 |
cttttgtcgcgaaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtgactcttcacgattaaatcttctcttgcttttgc |
12492599 |
T |
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| Q |
115 |
atattgataaggcacagcaggttcaattcgcatcgcttcatagacaactgatttaactaacggcattttttctaacgactgaattgttactccgccttct |
214 |
Q |
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| T |
12492598 |
atattgataaggcacagcaggttcaattcgcatcgcttcatagacaactgatttaactaacggcattttttctaacgactgaattgttactccgccttct |
12492499 |
T |
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| Q |
215 |
tgttttaccacggttcttctctc |
237 |
Q |
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|||||||||||||||||| |||| |
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| T |
12492498 |
tgttttaccacggttcttatctc |
12492476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 12507617 - 12507406
Alignment:
| Q |
26 |
aaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtgactcttcacaattaaatcttctcttgcttttgcatattgataag |
125 |
Q |
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|||| |||||| || || ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12507617 |
aaagattggtacccgaaaatcatctcaccctttttaatttcaaaagctgcatcgtgactcttcacaattaaatcttctcttgcttttgcatattgataac |
12507518 |
T |
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| Q |
126 |
gcacagcaggttcaattcgcatcgcttcatagacaactgatttaactaacggcattttttctaacgactgaattgttactccgccttcttgttttaccac |
225 |
Q |
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| T |
12507517 |
gaacgacaggttcaatcctcaaaacttcataaacaacggatttaactaatgacattttttctaacgactgaattgttaccccgccttcgttttttacaat |
12507418 |
T |
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| Q |
226 |
ggttcttctctc |
237 |
Q |
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||||||| |||| |
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| T |
12507417 |
ggttcttatctc |
12507406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 25733266 - 25733138
Alignment:
| Q |
15 |
cttttgtcgcgaaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtgactcttcacaattaaatcttctcttgcttttgc |
114 |
Q |
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||||||| ||||| ||||| |||||||| ||||| ||||| || || || ||||||| || || || |||| ||| | || ||| || || ||||| || |
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| T |
25733266 |
cttttgtagcgaacggttgatatccaaagatcatttcacctttcttgatctcaaaagatgcatcatggctctgcaccactagatcctccctagctttagc |
25733167 |
T |
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| Q |
115 |
atattgataaggcacagcaggttcaattc |
143 |
Q |
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||||||||| || |||||||||||||||| |
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| T |
25733166 |
atattgatatggaacagcaggttcaattc |
25733138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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