View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13817_high_4 (Length: 442)
Name: NF13817_high_4
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13817_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 114 - 426
Target Start/End: Original strand, 55076127 - 55076442
Alignment:
| Q |
114 |
ttctccaatggagcacgctgatctttccaccaataatggaggtaacataatttcatcccttcaagttgagg---aggaggctgcagatcggaagccctgc |
210 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
55076127 |
ttctccaatggagcacactgatctttccaccaataatggatgtaacagaatttcatcccttcaagttgaggaggaggaggctgcagatcagaagccatgc |
55076226 |
T |
|
| Q |
211 |
cctctccgtaagatgattgccgtggcatccattgccgccggcatacaatttgggtgggccctacagctctcccttctcacaccatacattcagcttctag |
310 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55076227 |
cctctccgtaagatgattgttgtggcatccattgccgccggcatacaatttgggtgggccctacagctctcccttctcacaccatacattcagcttctag |
55076326 |
T |
|
| Q |
311 |
gtgtacctcacaagtgggctgccaacatctggctatgtggtcccatatcaggcatgatcgtccagccaatcgttggctactacagtgaccgaagtcattc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55076327 |
gtgtacctcacaagtgggctgccaacatctggctatgtggtcccatatcaggcatgatcgtccagccaatcgttggatactacagtgaccgaagtcattc |
55076426 |
T |
|
| Q |
411 |
tcgttttggtcgccgc |
426 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
55076427 |
tcgttttggtcgccgc |
55076442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 55076064 - 55076125
Alignment:
| Q |
21 |
catacataccagccataattcccgcgttataaattcaccaaaaactcattcttgcacataaa |
82 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55076064 |
catacatcccagccataattcccgcgttataaattcaccaaaaactcactcttgcacataaa |
55076125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 416
Target Start/End: Complemental strand, 15125802 - 15125621
Alignment:
| Q |
235 |
gcatccattgccgccggcatacaatttgggtgggccctacagctctcccttctcacaccatacattcagcttctaggtgtacctcacaagtgggctgcca |
334 |
Q |
| |
|
|||||||| || ||||| || ||||| ||||||||||||||||| || | || |||||||| | ||| | || ||||| || || |||||||||||| |
|
|
| T |
15125802 |
gcatccatcgcggccggtattcaattcgggtgggccctacagctttcattgctaacaccatatgtccagttgcttggtgtcccacatcagtgggctgcca |
15125703 |
T |
|
| Q |
335 |
acatctggctatgtggtcccatatcaggcatgatcgtccagccaatcgttggctactacagtgaccgaagtcattctcgttt |
416 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||| | || ||| | || |||||||||||||||||||| ||||| ||||| |
|
|
| T |
15125702 |
acatctggctatgtggtccaatttcaggtatgatcatacaaccacttgtaggctactacagtgaccgaagccattcacgttt |
15125621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 10931826 - 10931880
Alignment:
| Q |
231 |
cgtggcatccattgccgccggcatacaatttgggtgggccctacagctctccctt |
285 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
10931826 |
cgtggcgtccatcgccgccggcattcaattcggatgggccctacagctctccctt |
10931880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University