View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13817_high_8 (Length: 364)

Name: NF13817_high_8
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13817_high_8
NF13817_high_8
[»] chr2 (1 HSPs)
chr2 (18-355)||(3072305-3072637)
[»] chr3 (17 HSPs)
chr3 (35-225)||(50906566-50906749)
chr3 (17-131)||(38042228-38042342)
chr3 (42-140)||(38038842-38038940)
chr3 (157-269)||(38042113-38042225)
chr3 (305-355)||(38038485-38038535)
chr3 (298-355)||(50913434-50913491)
chr3 (295-354)||(50906968-50907027)
chr3 (42-140)||(38027750-38027848)
chr3 (82-140)||(38032577-38032635)
chr3 (305-355)||(38034993-38035043)
chr3 (298-355)||(38032220-38032277)
chr3 (312-355)||(38027393-38027436)
chr3 (296-355)||(38041878-38041937)
chr3 (67-141)||(55082519-55082599)
chr3 (174-242)||(55086879-55086947)
chr3 (42-140)||(38035356-38035455)
chr3 (317-355)||(55082852-55082890)
[»] chr8 (3 HSPs)
chr8 (17-131)||(21633889-21634003)
chr8 (42-140)||(21608552-21608650)
chr8 (298-355)||(21608195-21608252)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 3072637 - 3072305
Alignment:
Q  18 aaatcagtgtataacttgtgtttgtgcaatgcaagtatttcaggtgacacaaaaaacaatagataaattcacaagaatatagttttgtacggttctcatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3072637 aaatcagtgtataacttgtgtttgtgcaatgcaagtatttcaggtgacacaaaaaacaaaagataaattcacaagaatatagttttgtacggttctcatt 3072538  T
Q  118 tctgatttccacttaagaggaaaggaaacatcaaaataaacaaaagaaatttgtgatatgcacaaaagttctctcaactagttaatcctactgtgtaatg 217  Q
    ||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3072537 tctgatttccactcaagaggaaa-----catcaaaataaacaaaagaaatttgtgatatgcacaaaagttctctcaactagttaatcctactgtgtaatg 3072443  T
Q  218 ttttcgttcatatgaattttttgcagtgtggatttaactctaggccgttcaactgttcaagcagaaagttgtatgtaaaaatagccatttggggcttcca 317  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3072442 ttttcgttcatatgacttttttgcagtgtggatttaattctaggccgttcaactgttcaagcagaaagttgtatgtaaaaatagccatttggggcttcct 3072343  T
Q  318 cttgtttgctagatgattgacctgcactaaatgatgat 355  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  3072342 cttgtttgctagatgattgacttgcactaaatgatgat 3072305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 50906566 - 50906749
Alignment:
Q  35 gtgtttgtgcaatgcaagtatttcaggtgacacaaaaaacaatagataaattcacaagaatatagttttgtacggttctcatttctgatttccacttaag 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  50906566 gtgtttgtgcaatgcaagtatttcaggtgacacaaaaaacaatagctaaattcacaagaatatagttttgtaagattctcatttctgatttccacttaag 50906665  T
Q  135 aggaaaggaaacatcaaaataaacaaaagaaatttgtgatatgcacaaaagttctctcaactagttaatcctactgtgtaatgttttcgtt 225  Q
         ||||||||||||||||||||||| ||| |||||||||  ||||||||| |||||| |||| ||||||| ||||| ||||| |||||    
T  50906666 -----aggaaacatcaaaataaacaaaacaaaattgtgatat--acaaaagttgtctcaagtagtcaatcctattgtgttatgttatcgtt 50906749  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 38042342 - 38042228
Alignment:
Q  17 aaaatcagtgtataacttgtgtttgtgcaatgcaagtatttcaggtgacacaaaaaacaatagataaattcacaagaatatagttttgtacggttctcat 116  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  38042342 aaaatcagtgcatgaattgtgtttgtgcaatgcaagtatttcaggtgacacaaaaaacaaaagataaattcacaagaatatagttttgtaaggttctcat 38042243  T
Q  117 ttctgatttccactt 131  Q
    ||| |||||| ||||    
T  38042242 ttcagatttctactt 38042228  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 38038940 - 38038842
Alignment:
Q  42 tgcaatgcaagtatttcaggtgacacaaaaaacaatagataaattcacaagaatatagttttgtacggttctcatttctgatttccacttaagaggaaa 140  Q
    |||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||  || ||||||||||| ||||||| |||||||||||||    
T  38038940 tgcaatgcaattatttgagatgacacaaaaaacaacacataaattcacaagaatatagtttcataaggttctcatttatgatttcaacttaagaggaaa 38038842  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 38042225 - 38042113
Alignment:
Q  157 acaaaagaaatttgtgatatgcacaaaagttctctcaactagttaatcctactgtgtaatgttttcgttcatatgaattttttgcagtgtggatttaact 256  Q
    ||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||  ||||| ||| |||||||| |||||||| ||  | |||||| |    
T  38042225 acaaaagaaatttgtgatatgtacaaaagttgtcacaactagtcaatcctactgtgcgatgttatcgatcatatgacttttttgccgtaagaatttaatt 38042126  T
Q  257 ctaggccgttcaa 269  Q
     ||||||||||||    
T  38042125 ataggccgttcaa 38042113  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 38038535 - 38038485
Alignment:
Q  305 tttggggcttccacttgtttgctagatgattgacctgcactaaatgatgat 355  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  38038535 tttgggacttccacttgtttgctagatgattgacttgcactaaatgatgat 38038485  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 50913491 - 50913434
Alignment:
Q  298 atagccatttggggcttccacttgtttgctagatgattgacctgcactaaatgatgat 355  Q
    |||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||||    
T  50913491 atagccttttgggacttccacttctttgctagatgattgacttgcactaaatgatgat 50913434  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 50906968 - 50907027
Alignment:
Q  295 aaaatagccatttggggcttccacttgtttgctagatgattgacctgcactaaatgatga 354  Q
    ||||||||| |||||| | ||||||||||||||||| ||||||| |||||||||||||||    
T  50906968 aaaatagccttttgggacgtccacttgtttgctagacgattgacttgcactaaatgatga 50907027  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 38027848 - 38027750
Alignment:
Q  42 tgcaatgcaagtatttcaggtgacacaaaaaacaatagataaattcacaagaatatagttttgtacggttctcatttctgatttccacttaagaggaaa 140  Q
    ||||||| || ||||| || ||||||||||||||| | ||||||| |||||||||||||||  || ||||||||| |  | ||||||| ||||||||||    
T  38027848 tgcaatgtaattattttagatgacacaaaaaacaacacataaattgacaagaatatagtttcttaaggttctcatctaagttttccacataagaggaaa 38027750  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 38032635 - 38032577
Alignment:
Q  82 aaattcacaagaatatagttttgtacggttctcatttctgatttccacttaagaggaaa 140  Q
    |||||||||||||||||||||  || ||||||||||| |||||||||| ||||||||||    
T  38032635 aaattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaa 38032577  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 38035043 - 38034993
Alignment:
Q  305 tttggggcttccacttgtttgctagatgattgacctgcactaaatgatgat 355  Q
    |||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  38035043 tttgggacttccacttgtttgttagatgattgacttgcactaaatgatgat 38034993  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 38032277 - 38032220
Alignment:
Q  298 atagccatttggggcttccacttgtttgctagatgattgacctgcactaaatgatgat 355  Q
    |||||| |||||  |||||||||||||| |||||||||||| ||||||||||||||||    
T  38032277 atagccttttggaacttccacttgtttgatagatgattgacttgcactaaatgatgat 38032220  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 38027436 - 38027393
Alignment:
Q  312 cttccacttgtttgctagatgattgacctgcactaaatgatgat 355  Q
    ||||||||||||||||||||||||||| |||||||| |||||||    
T  38027436 cttccacttgtttgctagatgattgacttgcactaagtgatgat 38027393  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 38041937 - 38041878
Alignment:
Q  296 aaatagccatttggggcttccacttgtttgctagatgattgacctgcactaaatgatgat 355  Q
    |||||||| |||||| |||||| ||||||||| ||||| ||||||||| |||||||||||    
T  38041937 aaatagccttttgggacttccatttgtttgctggatgactgacctgcagtaaatgatgat 38041878  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 55082519 - 55082599
Alignment:
Q  67 caaaaaacaatagataaattcacaagaatatagtttt------gtacggttctcatttctgatttccacttaagaggaaag 141  Q
    |||||||||| ||||||||||| |||||||||||||       ||  |||||||||||| |||||||||||||||||||||    
T  55082519 caaaaaacaacagataaattcaaaagaatatagtttcattgaagttaggttctcatttcagatttccacttaagaggaaag 55082599  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 55086947 - 55086879
Alignment:
Q  174 tatgcacaaaagttctctcaactagttaatcctactgtgtaatgttttcgttcatatgaattttttgca 242  Q
    ||||||| |||||| ||||||||||| |||| |||||| ||||| | | |||||||||| |||||||||    
T  55086947 tatgcaccaaagttgtctcaactagtcaatcgtactgtctaatgctattgttcatatgacttttttgca 55086879  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 38035455 - 38035356
Alignment:
Q  42 tgcaatgcaagtatttcaggtgacac-aaaaaacaatagataaattcacaagaatatagttttgtacggttctcatttctgatttccacttaagaggaaa 140  Q
    |||||||||| ||||| |  |||||| |||||| || | ||||||||| ||||||||| |||  ||  ||||||||||  ||||||||||||||||||||    
T  38035455 tgcaatgcaattatttgaaatgacactaaaaaagaacacataaattcagaagaatataatttcttaaagttctcatttaagatttccacttaagaggaaa 38035356  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 55082852 - 55082890
Alignment:
Q  317 acttgtttgctagatgattgacctgcactaaatgatgat 355  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  55082852 acttgtttgatagatgattgacttgcactaaatgatgat 55082890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 21634003 - 21633889
Alignment:
Q  17 aaaatcagtgtataacttgtgtttgtgcaatgcaagtatttcaggtgacacaaaaaacaatagataaattcacaagaatatagttttgtacggttctcat 116  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  21634003 aaaatcagtgcatgaattgtgtttgtgcaatgcaagtatttcaggtgacacaaaaaacaaaagataaattcacaagaatatagttttgtaaggttctcat 21633904  T
Q  117 ttctgatttccactt 131  Q
    ||| |||||| ||||    
T  21633903 ttcagatttctactt 21633889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 21608650 - 21608552
Alignment:
Q  42 tgcaatgcaagtatttcaggtgacacaaaaaacaatagataaattcacaagaatatagttttgtacggttctcatttctgatttccacttaagaggaaa 140  Q
    |||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||  || ||||||||||| ||||||| || ||||||||||    
T  21608650 tgcaatgcaattatttgagatgacacaaaaaacaacacataaattcacaagaatatagtttcataaggttctcatttatgatttcaacataagaggaaa 21608552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 21608252 - 21608195
Alignment:
Q  298 atagccatttggggcttccacttgtttgctagatgattgacctgcactaaatgatgat 355  Q
    |||||| |||||  |||||||||||||| |||||||||||| ||||||||||||||||    
T  21608252 atagccttttggaacttccacttgtttgatagatgattgacttgcactaaatgatgat 21608195  T

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