View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13817_low_1 (Length: 596)

Name: NF13817_low_1
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13817_low_1
NF13817_low_1
[»] chr4 (10 HSPs)
chr4 (15-593)||(36940424-36941004)
chr4 (70-415)||(35097650-35097998)
chr4 (70-410)||(35106833-35107176)
chr4 (70-305)||(35098052-35098287)
chr4 (70-410)||(35072684-35073027)
chr4 (70-410)||(36296457-36296800)
chr4 (71-311)||(36961304-36961545)
chr4 (277-356)||(36935988-36936067)
chr4 (70-183)||(36935861-36935975)
chr4 (145-191)||(36953720-36953766)
[»] chr6 (2 HSPs)
chr6 (70-363)||(24040740-24041033)
chr6 (70-410)||(24014183-24014526)
[»] chr1 (1 HSPs)
chr1 (234-412)||(3123044-3123225)
[»] chr5 (1 HSPs)
chr5 (115-213)||(34919131-34919229)


Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 15 - 593
Target Start/End: Original strand, 36940424 - 36941004
Alignment:
Q  15 aagaaacacaattctaaactgcaaaacaaagtaagagaactcaatttgtacttagccagagatatcaatggttttaacttcatgattcttaatctctttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  36940424 aagaaacacaattctaaactgcaaaacaaagtaagagaactcaatttgtactttaccagagatatcaatggttttaacttcatgattcttgatctctttt 36940523  T
Q  115 ttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatccattttagcattctcaggcaatcttaatctcctcatgaacttcccac 214  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36940524 ttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatccattttagcattctcaggcaatcttaatctcctcatgaacttcccac 36940623  T
Q  215 tgctacgctccacgggatgccattgatcgttcttatcatctttctcagcgcttctttttccacttatctgaagaaccctatcatcttcaatctctacttt 314  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36940624 tgctacgctccacgggatgccattgatcgttcttatcttctttctcaacgcttctttttccacttatctgaagaaccctatcatcttcaatctctacttt 36940723  T
Q  315 cgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccaggagtctcttccaatccac--ttgtgctcacaaatgcagaactctcac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  36940724 cgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccaggagtctcttccaatccacatgtgtgctcacaaatgcagaactctcac 36940823  T
Q  413 gagacaattcagaaattgatatagttaatttaatttcatactagtgagaactcgcacaatgtaatccttatttcttagtactactatttcatatcacaaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36940824 gagacaattcagaaattgatatagttaatttaatttcatactagtgagaactcgcacaatgtaatccttatttcttagtactactatttcatatcacaaa 36940923  T
Q  513 ttagtctgtagtactcattttttattttgtttgtgttctaaaaaagagttggagcttgttatgctaggaagaataatttac 593  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36940924 ttagtctgtagtactcattttttattttgtttgtgttctaaaaacgagttggagcttgttatgctaggaagaataatttac 36941004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 70 - 415
Target Start/End: Complemental strand, 35097998 - 35097650
Alignment:
Q  70 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 169  Q
    |||||||| |||||||  ||||| ||| | ||||| ||||||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||| ||||    
T  35097998 ccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcca 35097899  T
Q  170 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcatctttctcagcgcttct 269  Q
    |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |  | ||    
T  35097898 ttttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcct 35097799  T
Q  270 ttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccagga 369  Q
     | ||| ||||||||||||||||||||| ||||||| || || ||| |||| |||||||||| ||| |||| |||||| | |||||| |||||| | ||     
T  35097798 ctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagcctcgaacacatgtgcttctggg 35097699  T
Q  370 gtct-cttccaatccact--tgtgctcacaaatgcagaactctcacgag 415  Q
    |||| |||||||||||||  ||||||  ||||||||||| |||||||||    
T  35097698 gtctccttccaatccacttgtgtgcttgcaaatgcagaattctcacgag 35097650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 70 - 410
Target Start/End: Complemental strand, 35107176 - 35106833
Alignment:
Q  70 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 169  Q
    |||||||| ||||||| ||| |||||| | ||||| |||||||  ||||| |||||||||| |||||| ||||||||||| |||||||||| ||||||||    
T  35107176 ccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcacttgatcca 35107077  T
Q  170 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcatctttctcagcgcttct 269  Q
    |||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||||| ||||| |||  | | ||    
T  35107076 ttttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcct 35106977  T
Q  270 ttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccagga 369  Q
     |  || ||||||||||||||||||||||||||||| || || ||| ||||||||||||||| ||| |||| |||||| |||||||| || ||| | ||     
T  35106976 ctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggg 35106877  T
Q  370 gtct-cttccaatcca--cttgtgctcacaaatgcagaactctc 410  Q
    |||| ||||||||| |  || ||||||||||| |||||| ||||    
T  35106876 gtctccttccaatcaatcctggtgctcacaaaagcagaattctc 35106833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 70 - 305
Target Start/End: Complemental strand, 35098287 - 35098052
Alignment:
Q  70 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 169  Q
    |||||||| |||||||  ||||| ||| | ||||| ||||||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||| ||||    
T  35098287 ccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcca 35098188  T
Q  170 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcatctttctcagcgcttct 269  Q
    |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |  | ||    
T  35098187 ttttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcct 35098088  T
Q  270 ttttccacttatctgaagaaccctatcatcttcaat 305  Q
     | ||| ||||||||||||||||||||| |||||||    
T  35098087 ctctccgcttatctgaagaaccctatcaccttcaat 35098052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 70 - 410
Target Start/End: Original strand, 35072684 - 35073027
Alignment:
Q  70 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 169  Q
    |||||||| || ||||  ||||| ||| | |||||||  |||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  35072684 ccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatcca 35072783  T
Q  170 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcatctttctcagcgcttct 269  Q
    |||| |||||||| ||  |||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||||| ||||| |||  | | ||    
T  35072784 ttttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcct 35072883  T
Q  270 ttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccagga 369  Q
     |  || ||||||||||||||||||||||||||||| || || ||| ||||||||||||||| ||| |||| |||||| |||||||| || ||| | ||     
T  35072884 ctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggg 35072983  T
Q  370 gtct-cttccaatcca--cttgtgctcacaaatgcagaactctc 410  Q
    |||| ||||||||| |  || ||||||||||| |||||| ||||    
T  35072984 gtctccttccaatcaatcctggtgctcacaaaagcagaattctc 35073027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 70 - 410
Target Start/End: Original strand, 36296457 - 36296800
Alignment:
Q  70 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 169  Q
    |||||||| ||||| |  ||||| ||| | |||||||  |||| ||| || ||||| ||||||||||| ||||||||||||||||||||||  |||||||    
T  36296457 ccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacctgatcca 36296556  T
Q  170 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcatctttctcagcgcttct 269  Q
    | || ||||| || |||||||| || |||||||| ||||| |||||||||||||||||| |||||||||| | |||||| || ||||||||| || | ||    
T  36296557 tcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccattggttgttcttgtcttctttctcaacgttcct 36296656  T
Q  270 ttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccagga 369  Q
     | |||||| ||||||||||| || ||||||||||| || || ||| |||| |||||||||| ||| |||| |||||| || |||||||||||| | ||     
T  36296657 ctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttctggg 36296756  T
Q  370 gtct-cttccaatcca--cttgtgctcacaaatgcagaactctc 410  Q
    |||| ||||||||| |  || ||||||||||| |||||| ||||    
T  36296757 gtctccttccaatcaatcctggtgctcacaaaagcagaattctc 36296800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 71 - 311
Target Start/End: Complemental strand, 36961545 - 36961304
Alignment:
Q  71 cagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgca-gctttcatttgatcca 169  Q
    |||||||||||||||| |||||| || | || || |  ||||  ||||| | ||| ||||||||||| |||||||||  ||   || ||||  |||||||    
T  36961545 cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatcca 36961446  T
Q  170 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcatctttctcagcgcttct 269  Q
    | ||||||||||| | |||||| ||  |||||||||| |||||||||||| ||||||||  |||||||| || ||||||||| ||||||||| |||||||    
T  36961445 tcttagcattctctgccaatctaaacttcctcatgaatttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacgcttct 36961346  T
Q  270 ttttccacttatctgaagaaccctatcatcttcaatctctac 311  Q
     | ||| || |||||||||||||||||| |||||||||||||    
T  36961345 ctctccgctgatctgaagaaccctatcaacttcaatctctac 36961304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 36935988 - 36936067
Alignment:
Q  277 cttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacac 356  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||||||    
T  36935988 cttatctgaagaaccatatcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaacac 36936067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 36935861 - 36935975
Alignment:
Q  70 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctcc-attgcagctttcatttgatcc 168  Q
    ||||||||||||||||| || |||||| | ||||||| ||||| ||  ||||| || ||||||||||| ||||||||| ||||||||||||| |||||||    
T  36935861 ccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttgatcc 36935960  T
Q  169 attttagcattctca 183  Q
    |||||||||||||||    
T  36935961 attttagcattctca 36935975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 36953720 - 36953766
Alignment:
Q  145 tccattgcagctttcatttgatccattttagcattctcaggcaatct 191  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatct 36953766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 70 - 363
Target Start/End: Original strand, 24040740 - 24041033
Alignment:
Q  70 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 169  Q
    ||||||||||||||||| || |||| | | |||||||  ||||  ||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  24040740 ccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttgatcca 24040839  T
Q  170 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcatctttctcagcgcttct 269  Q
    |||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||||| ||||| ||| || | ||    
T  24040840 ttttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcct 24040939  T
Q  270 ttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgct 363  Q
     |  || ||||||||||||||||||||||||||||| || || ||| |||| |||||||||| ||| |||| |||||| |||||||| ||||||    
T  24040940 ctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgct 24041033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 70 - 410
Target Start/End: Original strand, 24014183 - 24014526
Alignment:
Q  70 ccagagatatcaatggttttaacttcatgattcttaatctcttttttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatcca 169  Q
    |||||||| || ||||  ||||| ||| | |||||||  |||| ||| || ||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  24014183 ccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatcca 24014282  T
Q  170 ttttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcatctttctcagcgcttct 269  Q
    |||| ||||| || ||||| || ||||||||||||||||| || ||||| ||||||||  |||||||||||||||||||||| ||||||||| |  | ||    
T  24014283 ttttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaacattcct 24014382  T
Q  270 ttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccagga 369  Q
     | ||| ||||||||||||||||||||| ||||||| || || ||| ||||||||||||||| ||| |||| |||||| |||||||| |||||| | ||     
T  24014383 ctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttctggg 24014482  T
Q  370 gtct-cttccaatcca--cttgtgctcacaaatgcagaactctc 410  Q
    |||| ||||||||| |  || ||||||||||| |||||| ||||    
T  24014483 gtctccttccaatcaatcctggtgctcacaaaagcagaattctc 24014526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 234 - 412
Target Start/End: Complemental strand, 3123225 - 3123044
Alignment:
Q  234 ccattgatcgttcttatcatctttctcagcgcttctttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcatt 333  Q
    |||| |||||||||| || ||||||||| || | |||| ||| ||||||||||||||| ||||||||||||| || || ||| | || ||||||||||      
T  3123225 ccatcgatcgttcttgtcttctttctcaacggtcctttctccgcttatctgaagaaccttatcatcttcaatttcaaccttcacctcttccttcttcaac 3123126  T
Q  334 cctggaaaatcagcattgaacacgtgtgctccaggagtct-cttccaatcca--cttgtgctcacaaatgcagaactctcac 412  Q
    ||||||| |||||| |||||||| |||||| |  |||| | ||| || ||||  ||||||||||||||||| ||| ||||||    
T  3123125 cctggaagatcagctttgaacacatgtgcttctagagtttcctttcagtccactcttgtgctcacaaatgcggaattctcac 3123044  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 34919229 - 34919131
Alignment:
Q  115 ttaggcacagtgacagtgagaacgccattctccattgcagctttcatttgatccattttagcattctcaggcaatcttaatctcctcatgaacttccca 213  Q
    ||||| ||||| ||||| ||||| |||||||||||  ||||||| |  |||||||||||| ||||||||||||| || || |||||||| |||||||||    
T  34919229 ttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcataaacttccca 34919131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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