View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13817_low_11 (Length: 275)
Name: NF13817_low_11
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13817_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 39365303 - 39365059
Alignment:
| Q |
19 |
atagtctcatcggtttaattatacatctaaggtgaagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39365303 |
atagtctcatcggtttaattatacatctaaggtgaagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatcc |
39365204 |
T |
|
| Q |
119 |
aatcaaagcaccaacacatatccaataccaatatgtctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39365203 |
aatcaaagcaccaacacatatccaataccaatatgtctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgatccggttgagttaggaaga |
39365104 |
T |
|
| Q |
219 |
acctttcacaagaaaacatatcaaaatcatttgactatttatatt |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39365103 |
acctttcacaagaaaacatatcaaaatcatttgactatttatatt |
39365059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 39348500 - 39348257
Alignment:
| Q |
20 |
tagtctcatcggtttaattatacatctaaggtgaagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatcca |
119 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39348500 |
tagtctcatctgttttatcatacatctaaggtgaagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatcca |
39348401 |
T |
|
| Q |
120 |
atcaaagcaccaacacatatccaataccaatatgtctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39348400 |
atcaaagcaccaacacatatccaataccaatatgtctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaa |
39348301 |
T |
|
| Q |
220 |
cctttcacaagaaaacatatcaaaatcatttgactatttatatt |
263 |
Q |
| |
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||||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
39348300 |
cctttcataagaaatcatatcaaaatcatcagactatttatatt |
39348257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 39337200 - 39336957
Alignment:
| Q |
20 |
tagtctcatcggtttaattatacatctaaggtgaagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatcca |
119 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39337200 |
tagtctcatctgttttatcatacatctaaggtgaagatactcacgattcaagaaagtgagggcaaggatatatccaaagttgaaaagtaatgtatatcca |
39337101 |
T |
|
| Q |
120 |
atcaaagcaccaacacatatccaataccaatatgtctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaa |
219 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39337100 |
atcaaagcaccaacacatatccagtaccaatatgtctcagtaaagaaactgcgagatttcaaaacttcaactccaagtgattcggttgagttaggaagaa |
39337001 |
T |
|
| Q |
220 |
cctttcacaagaaaacatatcaaaatcatttgactatttatatt |
263 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||| |
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|
| T |
39337000 |
cctttcataggaaaacatatcaaaatcatcagactatttatatt |
39336957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 39565257 - 39565479
Alignment:
| Q |
20 |
tagtctcatcggtttaattatacatctaaggtgaagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatcca |
119 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
39565257 |
tagtctcatctgttttattatacatctaaggtgaagacactcacgattcaggaaagtgagggcaagcatatagccaaaattgaaaagtaatgtatatcca |
39565356 |
T |
|
| Q |
120 |
atcaaagcaccaacacatatccaataccaatatgtctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaa |
219 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||| |||||| ||||| | ||||||||||||||||||||||||||| | || ||||||||||| |||| |
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| T |
39565357 |
atcaaagcaccaacacctatccagtaccagtatgactcagtgaagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaa |
39565456 |
T |
|
| Q |
220 |
cctttcacaagaaaacatatcaa |
242 |
Q |
| |
|
||||||| ||||||| ||||||| |
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|
| T |
39565457 |
cctttcataagaaaatatatcaa |
39565479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 36 - 239
Target Start/End: Original strand, 39548394 - 39548597
Alignment:
| Q |
36 |
attatacatctaaggtgaagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacac |
135 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39548394 |
attacacatctaaggtgaagatactcacgattcaagaaagtgagggcaaggatatagccaaagttgaaaagtaatgtatatccaatcaaagcaccaacac |
39548493 |
T |
|
| Q |
136 |
atatccaataccaatatgtctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaacctttcacaagaaaac |
235 |
Q |
| |
|
|||||| ||||| |||| |||||| ||| | | |||||||||||||||||||||||||| || || || ||||||||||||||||| || ||||||| |
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|
| T |
39548494 |
ctatccagtaccagtatgactcagtgaagtatccgcgagatttcaaaacttcaactcctattggatccgtagagttaggaagaaccttccataagaaaat |
39548593 |
T |
|
| Q |
236 |
atat |
239 |
Q |
| |
|
|||| |
|
|
| T |
39548594 |
atat |
39548597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 239
Target Start/End: Original strand, 39539024 - 39539227
Alignment:
| Q |
36 |
attatacatctaaggtgaagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacac |
135 |
Q |
| |
|
|||| |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
39539024 |
attaaacatttaaggtgaagaaacttacgattcaagaaagtgagagcaaggatatatccaaagttgaagattaatgtatatccaatcaaagcaccaacac |
39539123 |
T |
|
| Q |
136 |
atatccaataccaatatgtctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaacctttcacaagaaaac |
235 |
Q |
| |
|
|||||| ||||| |||| |||| ||||||| | | |||||||||||||||||||||||| | ||| ||||||||||| ||||||||||| |||| ||| |
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|
| T |
39539124 |
ctatccagtaccagtatggctcactaaagaatccgtgagatttcaaaacttcaactcctatcggttccgttgagttagggagaacctttcataagacaac |
39539223 |
T |
|
| Q |
236 |
atat |
239 |
Q |
| |
|
|||| |
|
|
| T |
39539224 |
atat |
39539227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 226
Target Start/End: Original strand, 39589921 - 39590089
Alignment:
| Q |
58 |
actcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatccaataccaatatgtctc |
157 |
Q |
| |
|
||||||| |||||| ||| ||||||||| | || ||||||||||| |||||||| |||||||||| || |||| || |||||||||||| || | || |
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|
| T |
39589921 |
actcacggttcaagtaagcgagagcaagtaggtaaccaaagttgaatagtaatgtgtatccaatcattgctccaaaacctatccaataccagtaagactg |
39590020 |
T |
|
| Q |
158 |
agtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaacctttca |
226 |
Q |
| |
|
||||||||| | ||||||||||||| |||||||||||| || || || ||||| |||||||||||||| |
|
|
| T |
39590021 |
agtaaagaaccctcgagatttcaaaatttcaactcctagcgaatccgtcgagttgggaagaacctttca |
39590089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 39622701 - 39622861
Alignment:
| Q |
66 |
ttcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatccaataccaatatgtctcagtaaaga |
165 |
Q |
| |
|
||||||||||| |||||||| || || |||| | |||| |||||||| ||||||||||| ||||||| || |||||||||||| | | || |||||||| |
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|
| T |
39622701 |
ttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggactgagtaaaga |
39622800 |
T |
|
| Q |
166 |
aactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaacctttca |
226 |
Q |
| |
|
| | |||||||||||||||| ||||||||||| ||| |||||||| || | ||||||||| |
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|
| T |
39622801 |
atccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca |
39622861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 39575679 - 39575849
Alignment:
| Q |
53 |
aagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatccaataccaatat |
152 |
Q |
| |
|
|||| |||||||||| ||| |||| |||||||| || || || |||||||| |||||||||||||| | ||| || ||| ||||||||||||||| ||| |
|
|
| T |
39575679 |
aagaaactcacgattgaagtaagttagagcaagaatgtaacccaagttgaacagtaatgtatatccgagcaatgccgcaaaacatatccaataccagtat |
39575778 |
T |
|
| Q |
153 |
gtctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaacctt |
223 |
Q |
| |
|
| || |||||||| | ||||||| |||||| ||||||||||| | || |||||||||||||||||||| |
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|
| T |
39575779 |
gactgtgtaaagaacccacgagattccaaaacatcaactcctagcggtttagttgagttaggaagaacctt |
39575849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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