View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13817_low_12 (Length: 258)
Name: NF13817_low_12
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13817_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 41785113 - 41785277
Alignment:
| Q |
14 |
aaatgaaagttaagttaagtgaaaattcatctaaatatgtcatgtgatcgattaagttgtcacataaacatttcaattgttatattatcaaaaatatagc |
113 |
Q |
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| T |
41785113 |
aaatgaaagctaagttaagtaaaaattcatctaaatatgtcatgtgatcgactaagttgtcacataaacatctcaattgttatattatc-aaaatataac |
41785211 |
T |
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| Q |
114 |
ctcaaaatatacaagaataaaataaacatttaaattggaggatcgatatattgaatttagaaatat |
179 |
Q |
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| T |
41785212 |
ctcaaaatacacaagagtaaaataaacattcaaattggaggaccaatatattaaatttagagatat |
41785277 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 41785339 - 41785411
Alignment:
| Q |
169 |
tttagaaatattcttaatagtattatgcttcattaaggttcactaatcaatcatccacgtttaacctatctag |
241 |
Q |
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| T |
41785339 |
tttagaaatattcttaatagtattatgcttcattaaggttcactaatcaatcatccacatttaacctatctag |
41785411 |
T |
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