View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13817_low_14 (Length: 237)
Name: NF13817_low_14
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13817_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13079492 - 13079712
Alignment:
| Q |
1 |
acaatcatctttttcctttgttatgtttttcttgaaaccttcatctacttcattttgtatcttctcatatttttctccattcactttcttcatagacatt |
100 |
Q |
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| T |
13079492 |
acaatcatctttttcctttgttatgtttttcttgaaaccttcatctacttcattttgtatcttctcatatttttctccattcactttcttcatagacatt |
13079591 |
T |
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| Q |
101 |
ccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatttggttttcttccatcagatattccaatatcaacattctctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13079592 |
ccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatttggttttcttccatcaaatattccaatatcaacattctctt |
13079691 |
T |
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| Q |
201 |
gaaacttttgatttataattt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
13079692 |
gaaacttttgatttataattt |
13079712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13075288 - 13075505
Alignment:
| Q |
1 |
acaatcatctttttcctttgttatgtttttcttgaaaccttcatctacttcattttgtatcttctcatatttttctccattcactttcttcatagacatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075288 |
acaatcatctttttcctttgttatgtttttcttgaaaccttcatctat---attttgtatcttctcatatttttctccattcactttcttcatagacatt |
13075384 |
T |
|
| Q |
101 |
ccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatttggttttcttccatcagatattccaatatcaacattctctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13075385 |
ccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatttggttttcttccatcaaatattccaatatcaacattctctt |
13075484 |
T |
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| Q |
201 |
gaaacttttgatttataattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
13075485 |
gaaacttttgatttataattt |
13075505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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