View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13817_low_2 (Length: 575)
Name: NF13817_low_2
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13817_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 35415833 - 35415287
Alignment:
| Q |
1 |
gaagcttgatctgggttttgtggtggtcgtctgggtcgttcatcaccagcaacaccgccttggtattgttcccgtgtttgtggttttctctaaaacccat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35415833 |
gaagcttgatctgggttttgtggtggtcttctggatcgttcatcaccagcaacacctccttggtattgttcccgtgtttgtggttttctctaaaacccat |
35415734 |
T |
|
| Q |
101 |
gagagtatgtctgttttcttaaacagactcactgatttgtaggtgggttcgttgggtattgtttgttctatggttctgcagcaaaaccttgttgccgtcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35415733 |
gagagtatgtctgttttcttaaacagactcactgatttgtaggtgggtccgtt----------tgttctatggttctgcagcaaaaccttgttgccgtcg |
35415644 |
T |
|
| Q |
201 |
tgttggttttgttttctcatacctggtttgcttcgcgcgtggttcgaagggctcgaaagggttgtt---gcatgtgtgatttattttaggg-cttggttc |
296 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
35415643 |
tgttggttttcttttctcatacctggtttgcttcgcgcgtggttcgaagggctcgaaagggttgttaatgcatgtgtgatttattttaggggcttggttc |
35415544 |
T |
|
| Q |
297 |
gtgaatctatctgtgtttacggttggtttatacatcatacatcaaaagatagtttgattttactcagatatgtcttgtcttttgggg-tagcctaatatc |
395 |
Q |
| |
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| T |
35415543 |
gtgaatctatctgtgttgatggttggtttatacatcatacatcaaaaga-------attttactcaaatatgtcttgtcttttggggatagtctaatatc |
35415451 |
T |
|
| Q |
396 |
tatttcaattctccttgattgaatgcagacttattggttactaggtacgaaggtcaagtttcggtgtgtgttcactcggtttggagcttcgacgttacgt |
495 |
Q |
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| T |
35415450 |
tatttcaattctccttgattgaatgcagacttattggttact-ggtacgaaggtcaagtttcggtgtgtgttcactcagtttggagcctcgacgttacgt |
35415352 |
T |
|
| Q |
496 |
tcaaatggatggttttggctcgaaatggcattgaaggcttgctgtttttgact-ggagcatatgg |
559 |
Q |
| |
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| T |
35415351 |
tcaaatggatggttttggctcgaaatggcattgaaggcttgctgtttttgactgggagcatatgg |
35415287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 538
Target Start/End: Complemental strand, 7406832 - 7406694
Alignment:
| Q |
400 |
tcaattctccttgattgaatgcagacttattggttactaggtacgaaggtc-aagtttcggtgtgtgttcactcggtttggagcttcgacgttacgttca |
498 |
Q |
| |
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||||||||| |||||||||| ||||| |||||||| | ||||||||| || ||||| |||| ||||||||||||||||| | ||| | ||||| |
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| T |
7406832 |
tcaattctctttgattgaattcagacatattggttgat-ggtacgaagatccaagttctggtgggtgttcactcggtttggggtcgtgacactgtgttca |
7406734 |
T |
|
| Q |
499 |
aatggatggttttggctcgaaatggcattgaaggcttgct |
538 |
Q |
| |
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| T |
7406733 |
aatggatggttttggctggaaagggcatttaaggcttgct |
7406694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 210 - 355
Target Start/End: Complemental strand, 20114870 - 20114721
Alignment:
| Q |
210 |
tgttttctcatacctggtttgcttcgcgcgtggttcgaagggctcgaaagggttgtt---gcatgtgtgatttattttaggg-cttggttcgtgaatcta |
305 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||| || |||||||||| || |||| ||||||||||||||||| |
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| T |
20114870 |
tgttttctcagacctggtttgcttcgcgtgtggttcgaagagctcgaaagggctgttaatgcctgtgtgatttgttgcaggggcttggttcgtgaatcta |
20114771 |
T |
|
| Q |
306 |
tctgtgtttacggttggtttatacatcatacatcaaaagatagtttgatt |
355 |
Q |
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||| |||| |||||||||||||||| |||||||||||||||| ||||||| |
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| T |
20114770 |
tctatgttgacggttggtttatacaccatacatcaaaagataatttgatt |
20114721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 534
Target Start/End: Complemental strand, 20114689 - 20114555
Alignment:
| Q |
400 |
tcaattctccttgattgaatgcagacttattggttactaggtacgaaggtc-aagtttcggtgtgtgttcactcggtttggagcttcgacgttacgttca |
498 |
Q |
| |
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||||| |||||| ||||||| || ||| ||||||| || |||| ||||||| ||||| || |||||||| |||| |||| ||| ||||||| |||||| |
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| T |
20114689 |
tcaatcctccttaattgaattcatactgattggttgct-ggtaggaaggtccaagttccgttgtgtgttgactcagtttagagtcgcgacgttgcgttca |
20114591 |
T |
|
| Q |
499 |
aatggatggttttggctcgaaatggcattgaaggct |
534 |
Q |
| |
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||||||||||||||| |||| ||||||||||||| |
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| T |
20114590 |
aatggatggttttggtctgaaagggcattgaaggct |
20114555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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