View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13817_low_3 (Length: 541)
Name: NF13817_low_3
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13817_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 49 - 538
Target Start/End: Complemental strand, 48539995 - 48539519
Alignment:
| Q |
49 |
gactcatcaaagttgaaagaaaaagtgtgtcgcccaccctatctcctctacttccgtggcagcgctgtgggttcacttccaacactaaactaaaccctag |
148 |
Q |
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| T |
48539995 |
gactcatcaaagttgaaagaaaaagtgtgtcgcccaccctttctcctctacttccgtggcagcgctgtgggttcacttccaacactaaacc--------- |
48539905 |
T |
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| Q |
149 |
ctagctagggtgggtgtattttagtaatttcgtattttgtcatttcatctctcacaagaatcctctgtctccgcggcggtttcttttgcaatagaaaatg |
248 |
Q |
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| T |
48539904 |
----ctagggtgggtgtattttagtaatttcgtattttgtcatttcatctctcacaagaatcttctgtctccgcggcggtttcttttgcaacagaaaatg |
48539809 |
T |
|
| Q |
249 |
atgaagatgagttcagtagcacttaggtcattcaaattcaaatccaatttttcactttcaacaacaagaaatctttctacttggttatttccaggtagat |
348 |
Q |
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| T |
48539808 |
atgaagatgagttcagtagcacttaggtcattcaaattcaaatccaatttttcactttcaacaacaagaaatctttctacttggttatttccaggtagat |
48539709 |
T |
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| Q |
349 |
acccttcttgctcatttctgaatctgttgttgttttaccatgtgttttgaaatttgcattttcacgctgtcgactctcaataacatagaacctatcaatt |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48539708 |
acccttcttgctcatttctgaatctgttgttgttttaccatgtgttttgaaatttgcattttcacgctgtcgactctcaataacatagaacctatcaatt |
48539609 |
T |
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| Q |
449 |
ttgaattttagctctggactcccagtaactaagtcgaatttatgtgtagagttacacctgtttatcccagatattctcttcatttcagtc |
538 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
48539608 |
ttgaattttagctctggactcccagtaactatgtcgaatttatgtgtagtgttacacctgtttatcccagatattctcttcattgcagtc |
48539519 |
T |
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