View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13817_low_5 (Length: 431)
Name: NF13817_low_5
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13817_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Original strand, 502200 - 502609
Alignment:
| Q |
7 |
agacctccatctaaatgatgttttagattacatattaccttatttttgtctttagaattcaccttcaaaaccaatacaaacttaaaagcatgtccatatg |
106 |
Q |
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| T |
502200 |
agacctccatctaaatgatgttttagattacatattaccttatttttgtctttagaattcaccttcaaaaccaatacaaacttaaaagcatgtccatatg |
502299 |
T |
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| Q |
107 |
accaaaaaatagatgcatctgttacataagtgtgatgatttaaacctgctaaaatcataaattaccatgcatatctactaaaatataaaatcttatttct |
206 |
Q |
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| T |
502300 |
accaaaaaatagatgcatctgttacttaagtgtgatgatttaaacctgctaaaatcataaattaccatgcatatctactaaaatataaaattttatttct |
502399 |
T |
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| Q |
207 |
gctttatataacaaattatgatggaaaagaaacaaaaaaggttcagggtattgatgcgaagtaatgtgtattgcttcaattttctttggagtcacatttc |
306 |
Q |
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| T |
502400 |
gctttatataacaaattaggatggaaaagaaacaaaaaaggttcagggtattgatgcgaagtaatgtgtattgcttcaattttctttggagtcacatttc |
502499 |
T |
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| Q |
307 |
cagatagaaatagaagtggttgcatcttgcatgtgcagcaagatgcaatagagtagatggaaagagtaagtaacaagtacctatgcagagcatatacttc |
406 |
Q |
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| T |
502500 |
cagatataaatagaagtggttgcatcttgcatgtgcagcaagatgcaatagaatagatggaaagagtaaataacaagtacctatgcagagcatatacttc |
502599 |
T |
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| Q |
407 |
acatttgttg |
416 |
Q |
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| T |
502600 |
acatttgttg |
502609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 353 - 416
Target Start/End: Original strand, 11789213 - 11789276
Alignment:
| Q |
353 |
aatagagtagatggaaagagtaagtaacaagtacctatgcagagcatatacttcacatttgttg |
416 |
Q |
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| T |
11789213 |
aataaagtagatggaaagagtaagtaacaagtacctatgcagagcacattcttcacatttgttg |
11789276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 11789108 - 11789207
Alignment:
| Q |
191 |
ataaaatcttatttctgctttatataacaaattatgatggaaaagaaacaaaaaaggttcagggtattgatgcgaagtaatgtgtattgcttcaattttc |
290 |
Q |
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| T |
11789108 |
ataaaatcttattt-tgctttatataacaaattaggacgggaaagaaacaaaacaggatcagggtattaaagcaaagcaatgtgcatcgtttcaatattc |
11789206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 412
Target Start/End: Original strand, 11780788 - 11780851
Alignment:
| Q |
349 |
atgcaatagagtagatggaaagagtaagtaacaagtacctatgcagagcatatacttcacattt |
412 |
Q |
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| T |
11780788 |
atgcaagagagtagattaaaagagtaagtaacaagtacctatgcagtgcacaatcttcacattt |
11780851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 15440705 - 15440656
Alignment:
| Q |
281 |
ttcaattttctttggagtcacatttccagatagaaatagaagtggttgca |
330 |
Q |
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| T |
15440705 |
ttcaatattctttggagtcacatttccggatagaaacagaagtgattgca |
15440656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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