View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13817_low_9 (Length: 277)

Name: NF13817_low_9
Description: NF13817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13817_low_9
NF13817_low_9
[»] chr5 (12 HSPs)
chr5 (85-174)||(29221220-29221308)
chr5 (1-64)||(29221297-29221360)
chr5 (85-131)||(11907201-11907247)
chr5 (87-132)||(15857657-15857702)
chr5 (85-130)||(39135689-39135734)
chr5 (87-131)||(12830978-12831022)
chr5 (87-131)||(12862958-12863002)
chr5 (85-114)||(11906385-11906414)
chr5 (87-132)||(22819588-22819633)
chr5 (186-227)||(29221297-29221338)
chr5 (88-129)||(39134700-39134741)
chr5 (91-132)||(42510150-42510191)
[»] chr4 (13 HSPs)
chr4 (85-131)||(11482826-11482872)
chr4 (87-132)||(38417585-38417630)
chr4 (85-130)||(17494157-17494202)
chr4 (87-128)||(43418065-43418106)
chr4 (85-127)||(5417334-5417376)
chr4 (85-131)||(43708866-43708912)
chr4 (85-131)||(47572616-47572662)
chr4 (87-132)||(34438438-34438483)
chr4 (87-132)||(34439699-34439744)
chr4 (87-132)||(41348271-41348316)
chr4 (87-132)||(43419414-43419459)
chr4 (87-132)||(50531795-50531840)
chr4 (85-129)||(17319072-17319116)
[»] chr8 (9 HSPs)
chr8 (87-132)||(8095378-8095423)
chr8 (85-131)||(9190482-9190528)
chr8 (85-131)||(16346129-16346175)
chr8 (85-132)||(2421332-2421379)
chr8 (85-131)||(4534064-4534110)
chr8 (85-131)||(9189424-9189470)
chr8 (85-114)||(12818784-12818813)
chr8 (87-132)||(22619927-22619972)
chr8 (87-132)||(22621173-22621218)
[»] chr1 (12 HSPs)
chr1 (87-132)||(14765133-14765178)
chr1 (85-132)||(22167809-22167856)
chr1 (87-129)||(36509843-36509885)
chr1 (87-132)||(36511370-36511415)
chr1 (87-132)||(40110691-40110736)
chr1 (85-131)||(30743117-30743163)
chr1 (85-131)||(43807465-43807511)
chr1 (87-132)||(19466244-19466289)
chr1 (85-114)||(21246532-21246561)
chr1 (87-132)||(40109393-40109438)
chr1 (85-130)||(43808562-43808607)
chr1 (93-129)||(40812653-40812689)
[»] chr7 (9 HSPs)
chr7 (88-131)||(47537080-47537123)
chr7 (87-132)||(132038-132083)
chr7 (87-118)||(10256155-10256186)
chr7 (85-132)||(13287033-13287080)
chr7 (91-130)||(35483610-35483649)
chr7 (85-131)||(37781987-37782033)
chr7 (85-131)||(40881121-40881167)
chr7 (85-131)||(47927409-47927455)
chr7 (87-132)||(10257425-10257470)
[»] chr6 (4 HSPs)
chr6 (85-131)||(1757534-1757580)
chr6 (87-132)||(13800063-13800108)
chr6 (85-114)||(27108231-27108260)
chr6 (85-114)||(27150028-27150057)
[»] chr3 (14 HSPs)
chr3 (85-131)||(50150751-50150797)
chr3 (85-130)||(1031846-1031891)
chr3 (91-132)||(12062423-12062464)
chr3 (87-132)||(48867469-48867514)
chr3 (85-120)||(32999827-32999862)
chr3 (87-130)||(43346488-43346531)
chr3 (85-128)||(45730667-45730710)
chr3 (85-131)||(2088872-2088918)
chr3 (85-131)||(33000840-33000886)
chr3 (87-132)||(23559851-23559896)
chr3 (87-132)||(43345351-43345396)
chr3 (95-132)||(51825660-51825697)
chr3 (85-130)||(53901599-53901644)
chr3 (87-131)||(48866173-48866217)
[»] chr2 (4 HSPs)
chr2 (85-130)||(30178575-30178620)
chr2 (93-130)||(3533667-3533704)
chr2 (87-131)||(14510549-14510593)
chr2 (87-127)||(25570914-25570954)
[»] scaffold0041 (1 HSPs)
scaffold0041 (85-131)||(85116-85162)
[»] scaffold0009 (1 HSPs)
scaffold0009 (85-131)||(205592-205638)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 29221220 - 29221308
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtccccactatgattgtcctatgtagttgcctcgagcaatattgtgt 174  Q
    |||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||    
T  29221220 aatttctcagtttggttc-ttaactattaagtgtttcagtttagtccccactatgattgtcatatgtagttgcttcgagaaatattgtgt 29221308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29221360 - 29221297
Alignment:
Q  1 ttttattaaagttgttcgttttgattattttcatatttgatatgtgaatgtgacacaatatttc 64  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  29221360 tttttttaaagttgttcattttgattattttcatatttgatatgtgaatttgacacaatatttc 29221297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 11907247 - 11907201
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  11907247 aatttctcagtttggtcccttaactattaaatgtttcaatttggtcc 11907201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 15857702 - 15857657
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||    
T  15857702 tttctcagtttggtcccttaactataaagtgtttcaatttgttccc 15857657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 39135734 - 39135689
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtc 130  Q
    |||||||||||||| ||||||||||||||| ||||||| |||||||    
T  39135734 aatttctcagtttgctcccttaactattaaatgtttcaatttggtc 39135689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 12831022 - 12830978
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||||    
T  12831022 tttctcagtttgatcccttaactattaagtgtctcaatttggtcc 12830978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 12863002 - 12862958
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||||    
T  12863002 tttctcagtttgatcccttaactattaagtgtctcaatttggtcc 12862958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 11906385 - 11906414
Alignment:
Q  85 aatttctcagtttggtcccttaactattaa 114  Q
    ||||||||||||||||||||||||||||||    
T  11906385 aatttctcagtttggtcccttaactattaa 11906414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 22819633 - 22819588
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||| |||| ||||||||||||||||||| ||| |||||||||    
T  22819633 tttctcaatttgatcccttaactattaagtgtctcaatttggtccc 22819588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 29221297 - 29221338
Alignment:
Q  186 gaaatattgtgtcacattcacctatcaaatatgaatataatc 227  Q
    |||||||||||||| |||||| ||||||||||||| ||||||    
T  29221297 gaaatattgtgtcaaattcacatatcaaatatgaaaataatc 29221338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 39134700 - 39134741
Alignment:
Q  88 ttctcagtttggtcccttaactattaagtgtttcagtttggt 129  Q
    |||||||||||||||||||||||||||  |||||| ||||||    
T  39134700 ttctcagtttggtcccttaactattaaacgtttcaatttggt 39134741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 42510150 - 42510191
Alignment:
Q  91 tcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||||||||||||||| |||||| ||| |||||||||    
T  42510150 tcagtttggtcccttaactataaagtgtctcaatttggtccc 42510191  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 11482826 - 11482872
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  11482826 aatttctcagtttggtcccttaactattaaatgtttcaatttggtcc 11482872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 38417585 - 38417630
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||    
T  38417585 tttctcagtttggtcccttaactattaagtgtgtcaatttggtccc 38417630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 17494157 - 17494202
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtc 130  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||    
T  17494157 aatttctcattttggtcccttaactattaagtgttttaatttggtc 17494202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 43418065 - 43418106
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttgg 128  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  43418065 tttctcagtttggtcccttaactataaagtgtttcaatttgg 43418106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 5417334 - 5417376
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttg 127  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||    
T  5417334 aatttttcagtttggtcccttaactattaaatgtttcaatttg 5417376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 43708866 - 43708912
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||||| |||| ||||||||||| ||||||| ||||||||    
T  43708866 aatttctcagtttagtccattaactattaaatgtttcaatttggtcc 43708912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 47572616 - 47572662
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    |||||||||| || |||||||||||||||| ||||||| ||||||||    
T  47572616 aatttctcagcttagtcccttaactattaaatgtttcaatttggtcc 47572662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 34438438 - 34438483
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||||| ||||||||||||| |||||| ||| |||||||||    
T  34438438 tttctcagtttagtcccttaactataaagtgtctcaatttggtccc 34438483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 34439744 - 34439699
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||| ||||||||||||||| || ||||||| |||||||||    
T  34439744 tttctcagtgtggtcccttaactataaaatgtttcaatttggtccc 34439699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 41348271 - 41348316
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||| ||||||||||||||||||| ||| |||| ||||    
T  41348271 tttctcagtttgatcccttaactattaagtgtgtcaatttgatccc 41348316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 43419459 - 43419414
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||||| ||||||||||||| |||||| ||| |||||||||    
T  43419459 tttctcagtttcgtcccttaactataaagtgtctcaatttggtccc 43419414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 50531840 - 50531795
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||| |||| ||||||||||||||||||| ||| |||||||||    
T  50531840 tttctcaatttgatcccttaactattaagtgtctcaatttggtccc 50531795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 17319072 - 17319116
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggt 129  Q
    |||||||||||||| || ||||||||| |||||||||| ||||||    
T  17319072 aatttctcagtttgatctcttaactataaagtgtttcaatttggt 17319116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 8095378 - 8095423
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||    
T  8095378 tttctcagtttggtcccttaactattaagtgtctcaatttggtccc 8095423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 9190528 - 9190482
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  9190528 aatttctcagtttagtcccttaactattaaatgtttcaatttggtcc 9190482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 16346129 - 16346175
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||    
T  16346129 aatttctcagtttggtcccttaactattaaacgtttcaatttggtcc 16346175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 2421379 - 2421332
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||| ||||||| ||||||||| |||||||||||||| |||||||||    
T  2421379 aatttatcagtttagtcccttaaatattaagtgtttcaatttggtccc 2421332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 4534064 - 4534110
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    |||||||||||||||||| |||| |||||| ||||||| ||||||||    
T  4534064 aatttctcagtttggtcctttaaatattaaatgtttcaatttggtcc 4534110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 9189424 - 9189470
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||| ||||||||||||||||||  |||||| ||||||||    
T  9189424 aatttctcagtgtggtcccttaactattaaacgtttcaatttggtcc 9189470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 12818784 - 12818813
Alignment:
Q  85 aatttctcagtttggtcccttaactattaa 114  Q
    ||||||||||||||||||||||||||||||    
T  12818784 aatttctcagtttggtcccttaactattaa 12818813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 22619927 - 22619972
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||| |||||||||| |||||||| ||| |||||||||    
T  22619927 tttctcagtttgatcccttaacttttaagtgtgtcaatttggtccc 22619972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 22621218 - 22621173
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||| |||||||||||||||||||  || |||||||||    
T  22621218 tttctcagtttgatcccttaactattaagtgtggcaatttggtccc 22621173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 14765178 - 14765133
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||    
T  14765178 tttctcagtttggtcccttaactattaagtgtgtcaatttggtccc 14765133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 22167809 - 22167856
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  22167809 aatttctcagtttagtcccttaaatattaagtgtttcaatttggtccc 22167856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 36509843 - 36509885
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggt 129  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  36509843 tttctcagtttggtcccttaactataaagtgtttcaatttggt 36509885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 36511415 - 36511370
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||    
T  36511415 tttctcagtttggtcccttaactataaagtgtctcaatttggtccc 36511370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 40110736 - 40110691
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||||    
T  40110736 tttctcagtttgatcccttaactattaagtgtgtcaatttggtccc 40110691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 30743117 - 30743163
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||| | |||||||||||||||||| ||||||| ||||||||    
T  30743117 aatttctcaatgtggtcccttaactattaaatgtttcaatttggtcc 30743163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 43807465 - 43807511
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||||| |||| ||||||||||| ||||||| ||||||||    
T  43807465 aatttctcagtttagtccattaactattaaatgtttcaatttggtcc 43807511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 19466289 - 19466244
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||||||| |||||||| |||||| ||| |||||||||    
T  19466289 tttctcagtttggtcctttaactataaagtgtctcaatttggtccc 19466244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 21246561 - 21246532
Alignment:
Q  85 aatttctcagtttggtcccttaactattaa 114  Q
    ||||||||||||||||||||||||||||||    
T  21246561 aatttctcagtttggtcccttaactattaa 21246532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 40109393 - 40109438
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||| |||||||||| |||||||| ||| |||||||||    
T  40109393 tttctcagtttgatcccttaacttttaagtgtgtcaatttggtccc 40109438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 43808607 - 43808562
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtc 130  Q
    ||||||||||| ||||||||||||||||||  |||||| |||||||    
T  43808607 aatttctcagtgtggtcccttaactattaaacgtttcaatttggtc 43808562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 40812689 - 40812653
Alignment:
Q  93 agtttggtcccttaactattaagtgtttcagtttggt 129  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  40812689 agtttggtcccttaactattaagtgtctcaatttggt 40812653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 47537123 - 47537080
Alignment:
Q  88 ttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  47537123 ttctcagtttggtcccttaactattaaatgtttcaatttggtcc 47537080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 132083 - 132038
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||    
T  132083 tttctcagtttggtcccttaactattaagtgtgtcgatttggtccc 132038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 118
Target Start/End: Original strand, 10256155 - 10256186
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgt 118  Q
    ||||||||||||||||||||||||||||||||    
T  10256155 tttctcagtttggtcccttaactattaagtgt 10256186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 13287080 - 13287033
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||  |||| ||||||||||||||||||||||| |||||||||    
T  13287080 aatttctctatttgatcccttaactattaagtgtttcaatttggtccc 13287033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 35483610 - 35483649
Alignment:
Q  91 tcagtttggtcccttaactattaagtgtttcagtttggtc 130  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  35483610 tcagtttggtcccttaactataaagtgtttcaatttggtc 35483649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 37781987 - 37782033
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    |||||||||||||||| | ||||||||||| ||||||| ||||||||    
T  37781987 aatttctcagtttggttctttaactattaaatgtttcaatttggtcc 37782033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 40881121 - 40881167
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||| ||||||||||||||||||  |||||| ||||||||    
T  40881121 aatttctcagtgtggtcccttaactattaaccgtttcaatttggtcc 40881167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 47927409 - 47927455
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||||| |||||||||||||||| ||||||  ||||||||    
T  47927409 aatttctcagtttagtcccttaactattaaatgtttcgatttggtcc 47927455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 10257470 - 10257425
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||| |||| ||||||||||||||||||| ||| |||||||||    
T  10257470 tttctcaatttgatcccttaactattaagtgtctcaatttggtccc 10257425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 1757580 - 1757534
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||    
T  1757580 aatttctcagtttggtcccttaactattaaacgtttcaatttggtcc 1757534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 13800063 - 13800108
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||    
T  13800063 tttctcagtttggtcccttaactattaattgtgtcaatttggtccc 13800108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 27108260 - 27108231
Alignment:
Q  85 aatttctcagtttggtcccttaactattaa 114  Q
    ||||||||||||||||||||||||||||||    
T  27108260 aatttctcagtttggtcccttaactattaa 27108231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 27150057 - 27150028
Alignment:
Q  85 aatttctcagtttggtcccttaactattaa 114  Q
    ||||||||||||||||||||||||||||||    
T  27150057 aatttctcagtttggtcccttaactattaa 27150028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 50150751 - 50150797
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  50150751 aatttctcagtttggtcacttaactattaaatgtttcaatttggtcc 50150797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 1031846 - 1031891
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtc 130  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||    
T  1031846 aatttctcagtgtggtcccttaactattaaatgtttcaatttggtc 1031891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 12062464 - 12062423
Alignment:
Q  91 tcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  12062464 tcagtttggtcccttaactattaagtgtctcaatttggtccc 12062423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 48867514 - 48867469
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||||    
T  48867514 tttctcaatttggtcccttaactattaagtgtgtcaatttggtccc 48867469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 32999827 - 32999862
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgttt 120  Q
    |||||||||||||||||||||||||||||| |||||    
T  32999827 aatttctcagtttggtcccttaactattaaatgttt 32999862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 43346531 - 43346488
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtc 130  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||    
T  43346531 tttctcagtttgatcccttaactattaagtgtgtcaatttggtc 43346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 45730667 - 45730710
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttgg 128  Q
    ||||||||||||||||||||||||||||||  |||||| |||||    
T  45730667 aatttctcagtttggtcccttaactattaaacgtttcaatttgg 45730710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 2088872 - 2088918
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    |||||||||||| |||||||||| |||||| ||||||| ||||||||    
T  2088872 aatttctcagttaggtcccttaattattaaatgtttcaatttggtcc 2088918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 33000886 - 33000840
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    |||||||||||||| |||||||||||||||  |||||| ||||||||    
T  33000886 aatttctcagtttgatcccttaactattaaacgtttcaatttggtcc 33000840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 23559851 - 23559896
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||||||||||||||| |||||||||| ||| |||| ||||    
T  23559851 tttctcagtttggtcccttaattattaagtgtctcaatttgatccc 23559896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 43345351 - 43345396
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    |||||||||| |||||||||||||| || ||||||| |||||||||    
T  43345351 tttctcagttaggtcccttaactataaaatgtttcaatttggtccc 43345396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 51825697 - 51825660
Alignment:
Q  95 tttggtcccttaactattaagtgtttcagtttggtccc 132  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  51825697 tttggtcccttaactataaagtgtttcaatttggtccc 51825660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 53901599 - 53901644
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtc 130  Q
    ||||||||||||| |||||||||||||||| ||||| | |||||||    
T  53901599 aatttctcagtttagtcccttaactattaaatgttttaatttggtc 53901644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 48866173 - 48866217
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||| |||||| ||||||||||||| ||| ||||||||    
T  48866173 tttctcagtttagtccctgaactattaagtgtgtcaatttggtcc 48866217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 30178575 - 30178620
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtc 130  Q
    |||||||||| |||||||||||||||| || |||||||||||||||    
T  30178575 aatttctcagattggtcccttaactatcaaatgtttcagtttggtc 30178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 3533704 - 3533667
Alignment:
Q  93 agtttggtcccttaactattaagtgtttcagtttggtc 130  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  3533704 agtttggtcccttaactattaagtgtgtcaatttggtc 3533667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 14510593 - 14510549
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||| ||||| |||||||||||||||||||| ||| ||||||||    
T  14510593 tttcttagtttagtcccttaactattaagtgtctcaatttggtcc 14510549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 25570954 - 25570914
Alignment:
Q  87 tttctcagtttggtcccttaactattaagtgtttcagtttg 127  Q
    ||||||||| | |||||||||||||||||||||||| ||||    
T  25570954 tttctcagtgtagtcccttaactattaagtgtttcaatttg 25570914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 85162 - 85116
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||| ||||||||||||||||||  |||||| ||||||||    
T  85162 aatttctcagtgtggtcccttaactattaaccgtttcaatttggtcc 85116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 205638 - 205592
Alignment:
Q  85 aatttctcagtttggtcccttaactattaagtgtttcagtttggtcc 131  Q
    ||||||||||||||||||||||| ||||||  |||||| ||||||||    
T  205638 aatttctcagtttggtcccttaattattaaacgtttcaatttggtcc 205592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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