View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13818_high_6 (Length: 370)
Name: NF13818_high_6
Description: NF13818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13818_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 144 - 349
Target Start/End: Complemental strand, 31767961 - 31767756
Alignment:
| Q |
144 |
gttcactcattcaactttttctagctagtatatataagattaacaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaag |
243 |
Q |
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| T |
31767961 |
gttcactcattcaactttttctagctagtatatataagattgacaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaag |
31767862 |
T |
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| Q |
244 |
tgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaattt |
343 |
Q |
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| T |
31767861 |
tgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcacaaattt |
31767762 |
T |
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| Q |
344 |
caagtc |
349 |
Q |
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|||||| |
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| T |
31767761 |
caagtc |
31767756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 169 - 351
Target Start/End: Complemental strand, 31761187 - 31761001
Alignment:
| Q |
169 |
tagtatatataagattaacaactaacaaattttgctt----caattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagatt |
264 |
Q |
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| T |
31761187 |
tagtatatataaccctagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagatt |
31761088 |
T |
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| Q |
265 |
caagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctc |
351 |
Q |
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| T |
31761087 |
caagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctc |
31761001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 187 - 349
Target Start/End: Original strand, 31749547 - 31749713
Alignment:
| Q |
187 |
caactaacaaattttgctt----caattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcaggg |
282 |
Q |
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| T |
31749547 |
caactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagag |
31749646 |
T |
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| Q |
283 |
atgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtc |
349 |
Q |
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| T |
31749647 |
atgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcaaaaatttcaagtc |
31749713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 186 - 343
Target Start/End: Complemental strand, 31753554 - 31753397
Alignment:
| Q |
186 |
acaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatg |
285 |
Q |
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| T |
31753554 |
acaactaacaaattttgcatcaattaacagttgggcggtcacaaatattggtaccaagtgttactgggcagaagagattcaagatttgcaagcagagatg |
31753455 |
T |
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| Q |
286 |
cagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaattt |
343 |
Q |
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| T |
31753454 |
cagcaaatataaatcttccaccggcattttttaacttctcacaactcatcgcaaattt |
31753397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 31768091 - 31768001
Alignment:
| Q |
14 |
ttctacaatacaagtttatagcattaccacaaccgaaactctaatttaaaaccatgtttaaatcaaactctaaatattaaagggcactcgt |
104 |
Q |
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| T |
31768091 |
ttctacaatacaagtttatagcattaccgcaaccgaaactctaatttaaaaccatgtttaaatcaaacactaaatattgaaggacactcgt |
31768001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 27887869 - 27887907
Alignment:
| Q |
231 |
tattggtaccaagtgttactaggaagaagagattcaaga |
269 |
Q |
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| T |
27887869 |
tattggtaccaagtgctactaggaagaagagatgcaaga |
27887907 |
T |
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