View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13818_low_2 (Length: 601)
Name: NF13818_low_2
Description: NF13818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13818_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Original strand, 6915848 - 6916406
Alignment:
| Q |
17 |
cagagagtgggcaaacaatcatttctggaatgggagaactacacttagatatttatgttaaatgcattaagatggagtatggggttgatgctacagttgg |
116 |
Q |
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| T |
6915848 |
cagagagtgggcaaacaatcatttctggaatgggagaactacacttagatatttatgttaaacgcattaagatggagtatggggttgatgctacagttgg |
6915947 |
T |
|
| Q |
117 |
aaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaaggacaatatggacgagtg |
216 |
Q |
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| T |
6915948 |
aaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggagggcaaggacaatatggacgagtg |
6916047 |
T |
|
| Q |
217 |
attggatatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaa |
316 |
Q |
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| T |
6916048 |
attggatatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaa |
6916147 |
T |
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| Q |
317 |
ttgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgt |
416 |
Q |
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| T |
6916148 |
ttgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagttcaaaatctccgagttgtcttgacagatggtgctgctcatgatgt |
6916247 |
T |
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| Q |
417 |
tgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgcttgtt |
516 |
Q |
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| T |
6916248 |
tgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgc----t |
6916343 |
T |
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| Q |
517 |
gaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggt |
579 |
Q |
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| T |
6916344 |
gaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggt |
6916406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 15039391 - 15039269
Alignment:
| Q |
99 |
ggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaa |
198 |
Q |
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| T |
15039391 |
ggttgatgctacagttggaaagccccgtgtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatccggagggcaa |
15039292 |
T |
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| Q |
199 |
ggacaatatggacgagtgattgg |
221 |
Q |
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| T |
15039291 |
ggacaatatggacgggtgattgg |
15039269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 15038438 - 15038314
Alignment:
| Q |
223 |
tatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgaga |
322 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
15038438 |
tatattgaaccactccctgctgggtcagaaactaagtttgaatttgaaaacatgcttgttggtcaagctattccatcaaattttttcgctgcaattgaga |
15038339 |
T |
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| Q |
323 |
aaggttttaaagaagctgccaactc |
347 |
Q |
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||||||||| ||||||||||||||| |
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| T |
15038338 |
aaggttttatagaagctgccaactc |
15038314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 353 - 465
Target Start/End: Complemental strand, 15038167 - 15038055
Alignment:
| Q |
353 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctat |
452 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
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| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctat |
15038068 |
T |
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| Q |
453 |
ctatgcttttaga |
465 |
Q |
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| T |
15038067 |
ctatgcttttaga |
15038055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 467 - 570
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
467 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
566 |
Q |
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|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
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| Q |
567 |
caag |
570 |
Q |
| |
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|||| |
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| T |
15037828 |
caag |
15037825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 15039977 - 15039923
Alignment:
| Q |
31 |
acaatcatttctggaatgggagaactacacttagatatttatgttaaatgcatta |
85 |
Q |
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||||| |||||||||||||||||||| ||||||||||| |||||| || |||||| |
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| T |
15039977 |
acaattatttctggaatgggagaactgcacttagatatctatgttgaacgcatta |
15039923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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