View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13818_low_3 (Length: 408)
Name: NF13818_low_3
Description: NF13818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13818_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 41710944 - 41711326
Alignment:
| Q |
8 |
tgagatgaaaaatcaaaccaatcattaatggaatgagttgaaatgaagtatttggagaagacttctaaaagaaaattgatgtaccatattcaacnnnnnn |
107 |
Q |
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| T |
41710944 |
tgagatgaaaaatcaaaccaaccattaatggaatgacttgaaatgaagtatttggagaagacttctaaaagaaaattgatgtaccatattcaacaaaaaa |
41711043 |
T |
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| Q |
108 |
nn-cccgatgtttttggtctaattttaaacaaaatacatcaacttttgtttacaaaattgtctcttacaatataataagataagatgtagtattaaaagt |
206 |
Q |
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| T |
41711044 |
aaacccgatgtttttggtctaattttagacaaaatacatcaacttttgtttacaaaattgtctcttacaatataataagataagatgtagtattaaaagt |
41711143 |
T |
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| Q |
207 |
gtaaccgatggattacgagaggtgtcccacatttacgtgtatgacacttcgaatatttttcaagtgtgaattgaattggatagacatttttcagtctttc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41711144 |
gtaaccgatggattacgagaggtgtcccacatttacgtg----acacttcgaatatttttcaagtgtgaattgaattggatagacatttttcagtctttc |
41711239 |
T |
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| Q |
307 |
gattccaatggaattatcgacaaatcattttcaatgaaaacaaaagtattatcattagtcaccgttacataatgttatctcctctgt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41711240 |
gattccaatggaattatcgacaaatcattttcaatgaaaacaaaagtattatcattagtccccgttacataatgttatctcctctgt |
41711326 |
T |
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