View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13818_low_4 (Length: 385)
Name: NF13818_low_4
Description: NF13818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13818_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 31009848 - 31010204
Alignment:
| Q |
11 |
ttattcttttgaaggaataggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgtttctaatt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31009848 |
ttattcttttgaaggaataggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgttcctaatt |
31009947 |
T |
|
| Q |
111 |
tttctgttgtatggaggttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactg |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31009948 |
tttctattgtatggaggttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactg |
31010047 |
T |
|
| Q |
211 |
ctttggttcaattaggtctttgtgtcaatctctttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaa |
310 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31010048 |
ctttggtacaattaggtctttgtgtcaatctctttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaa |
31010147 |
T |
|
| Q |
311 |
gtattgtttgtggcttaggtggttgttggttttggtggtaagtttagtcgcattttt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31010148 |
gtattgtttgtggcttaggtggttgttggttttggtggtaagtttagtcgcattttt |
31010204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 137 - 355
Target Start/End: Complemental strand, 9782707 - 9782489
Alignment:
| Q |
137 |
tttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactgctttggttcaattaggtctttgtgtc |
236 |
Q |
| |
|
||||||||| |||||||||||||||| |||| | | |||||||||| ||| |||| ||||| |||| || | ||||||||||||| || ||| | |
|
|
| T |
9782707 |
tttaggttattttgcttttggtgaagaaactaaggatattattactaataatttaggtcaaggtgtgataggtgttatggttcaattagggctatgtatt |
9782608 |
T |
|
| Q |
237 |
aatctctttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaagtattgtttgtggcttaggtggttgt |
336 |
Q |
| |
|
||| | ||| | || ||||||||||||||||||||||||||||| || |||||||||| |||||| | |||| ||||||||| ||| | |||||||||| |
|
|
| T |
9782607 |
aatttgtttattacatttcctttgatgatgaatcctgtttatgaggtttttgagagaaggttttgtgattctaggtattgtttatgggtgaggtggttgt |
9782508 |
T |
|
| Q |
337 |
tggttttggtggtaagttt |
355 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
9782507 |
tggttttggtggtgagttt |
9782489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University