View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13818_low_5 (Length: 373)
Name: NF13818_low_5
Description: NF13818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13818_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 5444887 - 5444691
Alignment:
| Q |
9 |
ttatactttgcaaaatgttgaattttgaaaattatgattagatatactattaatcagtccaatagtcatatagtttgttaaatattttgtgatcattgtt |
108 |
Q |
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| T |
5444887 |
ttatactttgcaaaatgttgaattttgaaaattatgattagatatactattaatcagtccaatagtcatatagtttgttaaatattttgtgatcattgtt |
5444788 |
T |
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| Q |
109 |
tgaaattaatttgaaaacaactaaaattcgcaaagtcacaattgttttcagacttcatagtgacaaagatatcagtatgcatggtagattaaaagta |
205 |
Q |
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| T |
5444787 |
tgaaattaatttgaaaacaactaaaattcgcaaactcacaattgttttcagacttcatagtgacaaagatatcagtatgcatggtagattaaaagta |
5444691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 5444625 - 5444541
Alignment:
| Q |
271 |
attctaaaataaattgatctaatcacgtatttagctcattannnnnnnncatcatggtactaatatgagatctaatgtccctaat |
355 |
Q |
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| T |
5444625 |
attctaaaataaattgatctaatcacgtatttagctcattattttttttcatcatggtactaatatgagatctaaggtccctaat |
5444541 |
T |
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