View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13818_low_7 (Length: 252)
Name: NF13818_low_7
Description: NF13818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13818_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 12803709 - 12803931
Alignment:
| Q |
18 |
gttcccaaagcacaacaaaagaaaataagttgagattgttttggnnnnnnngtatttcatcttaaaaacattttcaattttttgaaccccatttatacac |
117 |
Q |
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| T |
12803709 |
gttcccaaagcacaacaaaagaaaataagttgagattgttttggtttttttgtatttcatcttaaaaacattttcaattttttgaaccccatttatacac |
12803808 |
T |
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| Q |
118 |
tgtactcacgtgcaagcagtctacactgccatatcctccactaaaacccacgcataaactaacacaacaaaaagcttcaatggtcttgccctattttaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12803809 |
tgtactcacgtgcaagcagtctacactgccatatcctccactaaaacccacgcataaactaacacaacaaaaagcttcaatggtcttgccctattttaac |
12803908 |
T |
|
| Q |
218 |
ttttgtttacgaccatattcttc |
240 |
Q |
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|||||||||||||||| |||||| |
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| T |
12803909 |
ttttgtttacgaccattttcttc |
12803931 |
T |
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