View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13819_low_2 (Length: 385)

Name: NF13819_low_2
Description: NF13819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13819_low_2
NF13819_low_2
[»] chr6 (24 HSPs)
chr6 (10-369)||(34109411-34109786)
chr6 (151-369)||(34091880-34092098)
chr6 (172-369)||(34147596-34147793)
chr6 (172-369)||(34160212-34160409)
chr6 (151-368)||(34106721-34106937)
chr6 (234-369)||(34149899-34150034)
chr6 (234-369)||(34162515-34162650)
chr6 (16-152)||(34106529-34106665)
chr6 (252-369)||(34169676-34169795)
chr6 (53-139)||(34120046-34120135)
chr6 (53-139)||(34147207-34147296)
chr6 (53-139)||(34159823-34159912)
chr6 (159-364)||(34115594-34115795)
chr6 (34-152)||(34091703-34091821)
chr6 (162-226)||(28711046-28711110)
chr6 (163-226)||(34114547-34114610)
chr6 (163-266)||(34168325-34168424)
chr6 (163-227)||(34119041-34119106)
chr6 (163-227)||(34146200-34146265)
chr6 (163-227)||(34158816-34158881)
chr6 (159-223)||(34135834-34135898)
chr6 (172-226)||(32683181-32683235)
chr6 (29-155)||(34169531-34169657)
chr6 (83-155)||(34115456-34115528)
[»] scaffold0620 (2 HSPs)
scaffold0620 (151-369)||(7214-7432)
scaffold0620 (10-152)||(7013-7155)
[»] chr4 (1 HSPs)
chr4 (159-227)||(38648623-38648691)
[»] scaffold1113 (1 HSPs)
scaffold1113 (163-245)||(1798-1880)
[»] scaffold0961 (1 HSPs)
scaffold0961 (163-245)||(1737-1819)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 34109411 - 34109786
Alignment:
Q  10 tcgaagaatattagttccctgtccatatctgagttcttcaacgtaaatctctatatatgcagaattcattggtgaagatgtcgcatgatgatgtccttgc 109  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  34109411 tcgaacaatattagttccctgtccaaatctgagttcttcaacgtaaatctctatatatgcagaaatcattggcgaagatgtcgcatgatgatgtccttgc 34109510  T
Q  110 tgaaattaaaagcggcatgaaaaaggcgaactgtgcgtt----------------tgatttatcgatgcttttgtttcaagtttcacaattttagcttcc 193  Q
    |||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||    
T  34109511 tgaaattaaaagcggcatgaaaaaggcgaactgtgcgtttgatttaaaaaccgtttgatttatcgatgcttttgtttcaagtttcacaattttagcttcc 34109610  T
Q  194 ttgttcatatttgagttatttaatattaattaatttaccactaaacaagcagatgaggtttctggaggatgtgttgatttgcaaggcttaacttgaaaag 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34109611 ttgttcatatttgagttatttaatattaattaatttaccactaaacaagcagatgaggtttctggaggatgtattgatttgcaaggcttaacttgaaaag 34109710  T
Q  294 gagctagctgctaaacatcaaaaagataactctggaattcaaaaggtgagagcttcacttcaaaagaggatcgatg 369  Q
    |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  34109711 gagctagctgctaaacatcaaaaagataactctgaaattcaaaacctgagagcttcacttcaaaagaggatcgatg 34109786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 151 - 369
Target Start/End: Original strand, 34091880 - 34092098
Alignment:
Q  151 atttatcgatgcttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaatttaccactaaacaagcagatgag 250  Q
    ||||||||||||||||| |||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||  ||||| ||||||||||    
T  34091880 atttatcgatgcttttgattcaagtttcacaattttagttttctttttcatatctgagttatttaatattaattaatttacctttaaactagcagatgag 34091979  T
Q  251 gtttctggaggatgtgttgatttgcaaggcttaacttgaaaaggagctagctgctaaacatcaaaaagataactctggaattcaaaaggtgagagcttca 350  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||  || || ||||||| ||| |||| ||    
T  34091980 gtttcttgaggatgtgttgacttgcaaggctgaacttgaaaaggagctagctgctaaacatcaaaaggataacattgaaagtcaaaagctgatagctgca 34092079  T
Q  351 cttcaaaagaggatcgatg 369  Q
    |||||||||||||||||||    
T  34092080 cttcaaaagaggatcgatg 34092098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 172 - 369
Target Start/End: Original strand, 34147596 - 34147793
Alignment:
Q  172 aagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaatttaccactaaacaagcagatgaggtttctggaggatgtgttgat 271  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  34147596 aagtttcacaattttagtttccttgttcacatttgagttctttaatattaattaatttacctctaaacaagcagatgaggtttctggaggatgtgttgac 34147695  T
Q  272 ttgcaaggcttaacttgaaaaggagctagctgctaaacatcaaaaagataactctggaattcaaaaggtgagagcttcacttcaaaagaggatcgatg 369  Q
    |||||||||| |||||||||| |||||| | |||||||||||||| |||||| ||| |||||||||| |||||||| |||||||||||||||||||||    
T  34147696 ttgcaaggctgaacttgaaaatgagctatcagctaaacatcaaaaggataacgctgaaattcaaaagctgagagctgcacttcaaaagaggatcgatg 34147793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 172 - 369
Target Start/End: Original strand, 34160212 - 34160409
Alignment:
Q  172 aagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaatttaccactaaacaagcagatgaggtttctggaggatgtgttgat 271  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  34160212 aagtttcacaattttagtttccttgttcacatttgagttctttaatattaattaatttacctctaaacaagcagatgaggtttctggaggatgtgttgac 34160311  T
Q  272 ttgcaaggcttaacttgaaaaggagctagctgctaaacatcaaaaagataactctggaattcaaaaggtgagagcttcacttcaaaagaggatcgatg 369  Q
    |||||||||| |||||||||| |||||| | |||||||||||||| |||||| ||| |||||||||| |||||||| |||||||||||||||||||||    
T  34160312 ttgcaaggctgaacttgaaaatgagctatcagctaaacatcaaaaggataacgctgaaattcaaaagctgagagctgcacttcaaaagaggatcgatg 34160409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 151 - 368
Target Start/End: Original strand, 34106721 - 34106937
Alignment:
Q  151 atttatcgatgcttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaatttaccactaaacaagcagatgag 250  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||   |||||  |||||||||    
T  34106721 atttatcgatgcttttgattcaagtttcagaattttagtttccttgttcatatttgagttatgtaatattaattaatatacatgtaaacc-gcagatgag 34106819  T
Q  251 gtttctggaggatgtgttgatttgcaaggcttaacttgaaaaggagctagctgctaaacatcaaaaagataactctggaattcaaaaggtgagagcttca 350  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||| || | |||||||| |||||| | ||    
T  34106820 gtttctggaggatgtgttgatttgcaaggctgaacttgaaaaggagctagctgctgaacatcaaaaggttaactttgaatttcaaaagctgagagttgca 34106919  T
Q  351 cttcaaaagaggatcgat 368  Q
    ||||||| ||||||||||    
T  34106920 cttcaaatgaggatcgat 34106937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 34149899 - 34150034
Alignment:
Q  234 ctaaacaagcagatgaggtttctggaggatgtgttgatttgcaaggcttaacttgaaaaggagctagctgctaaacatcaaaaagataactctggaattc 333  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||| |||| |||||| ||| |||||    
T  34149899 ctaaaccagcagatgaggtttctggaggatgtgttgacttgcaaggctaaacttcaaaaggagctagcttctaaacatgaaaaggataacgctgaaattc 34149998  T
Q  334 aaaaggtgagagcttcacttcaaaagaggatcgatg 369  Q
    ||||| ||||||||  ||||||||||||||| ||||    
T  34149999 aaaagctgagagctaaacttcaaaagaggatagatg 34150034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 34162515 - 34162650
Alignment:
Q  234 ctaaacaagcagatgaggtttctggaggatgtgttgatttgcaaggcttaacttgaaaaggagctagctgctaaacatcaaaaagataactctggaattc 333  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||| |||| |||||| ||| |||||    
T  34162515 ctaaaccagcagatgaggtttctggaggatgtgttgacttgcaaggctaaacttcaaaaggagctagcttctaaacatgaaaaggataacgctgaaattc 34162614  T
Q  334 aaaaggtgagagcttcacttcaaaagaggatcgatg 369  Q
    ||||| ||||||||  ||||||||||||||| ||||    
T  34162615 aaaagctgagagctaaacttcaaaagaggatagatg 34162650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 34106529 - 34106665
Alignment:
Q  16 aatattagttccctgtccatatctgagttcttcaacgtaaatctctatatatgcagaattcattggtgaagatgtcgcatgatgatgtccttgctgaaat 115  Q
    |||||||||||| ||||||||||||||||||| ||  | ||||||||||| ||||||| | | |||   ||||||| |||||||||||||| ||||||||    
T  34106529 aatattagttccatgtccatatctgagttctttaatattaatctctatatctgcagaagttagtggcagagatgtcacatgatgatgtcctagctgaaat 34106628  T
Q  116 taaaagcggcatgaaaaaggcgaactgtgcgtttgat 152  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34106629 taaaagcggcatgaaaaaggcgaagtgtgcgtttgat 34106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 369
Target Start/End: Original strand, 34169676 - 34169795
Alignment:
Q  252 tttctggaggatgtgttgatttgcaaggcttaacttgaaaaggagcta--gctgctaaacatcaaaaagataactctggaattcaaaaggtgagagcttc 349  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||||  |||||||||||| |||| |||||  ||| |||||||||  |||||||| |    
T  34169676 tttctggaggatgtgttgacttgcaaggctgaacttcaaaaggagctatagctgctaaacatgaaaaggataaagctgaaattcaaaatctgagagctgc 34169775  T
Q  350 acttcaaaagaggatcgatg 369  Q
    ||||||||||||||||||||    
T  34169776 acttcaaaagaggatcgatg 34169795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 34120046 - 34120135
Alignment:
Q  53 taaatctctatatatgcagaattcattggtga---agatgtcgcatgatgatgtccttgctgaaattaaaagcggcatgaaaaaggcgaa 139  Q
    ||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  34120046 taaatctctatatctgcagaattcattggtgatgaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaa 34120135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 34147207 - 34147296
Alignment:
Q  53 taaatctctatatatgcagaattcattggtga---agatgtcgcatgatgatgtccttgctgaaattaaaagcggcatgaaaaaggcgaa 139  Q
    ||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  34147207 taaatctctatatctgcagaattcattggtgatgaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaa 34147296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 34159823 - 34159912
Alignment:
Q  53 taaatctctatatatgcagaattcattggtga---agatgtcgcatgatgatgtccttgctgaaattaaaagcggcatgaaaaaggcgaa 139  Q
    ||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  34159823 taaatctctatatctgcagaattcattggtgatgaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaa 34159912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 159 - 364
Target Start/End: Original strand, 34115594 - 34115795
Alignment:
Q  159 atgcttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaatttaccactaaacaagcagatgaggtttctgg 258  Q
    ||||||||| || |||||| | |||||||| ||| |  |||||| |||||||  || |||||| ||||    || |||||| || |||||||| || |||    
T  34115594 atgcttttgatttaagttttataattttagtttcttcattcataattgagttcgttgatattatttaa----cctctaaaccagtagatgaggattttgg 34115689  T
Q  259 aggatgtgttgatttgcaaggcttaacttgaaaaggagctagctgctaaacatcaaaaagataactctggaattcaaaaggtgagagcttcacttcaaaa 358  Q
    || | ||||||| |||||||||| ||||| ||||||||||| ||||||||||| |||| |||||| ||| |||||||||| |||||| |  |||||||||    
T  34115690 agaacgtgttgacttgcaaggctaaacttcaaaaggagctatctgctaaacatgaaaaggataacgctgaaattcaaaagctgagagttaaacttcaaaa 34115789  T
Q  359 gaggat 364  Q
    ||||||    
T  34115790 gaggat 34115795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 34091703 - 34091821
Alignment:
Q  34 atatctgagttcttcaacgtaaatctctatatatgcagaattcattggtgaagatgtcgcatgatgatgtccttgctgaaattaaaagcggcatgaaaaa 133  Q
    |||||||||||||||||  | ||||| ||||| ||||||| | | |||   |||||||||||||||||||| | |||||||||||||||||| |||||||    
T  34091703 atatctgagttcttcaatattaatctttatatctgcagaagttagtggcagagatgtcgcatgatgatgtcgtagctgaaattaaaagcggcttgaaaaa 34091802  T
Q  134 ggcgaactgtgcgtttgat 152  Q
    |||||| ||||||||||||    
T  34091803 ggcgaagtgtgcgtttgat 34091821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 28711046 - 28711110
Alignment:
Q  162 cttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaa 226  Q
    |||||| ||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||    
T  28711046 cttttgattcaagtttcacacttctagtttccttgttcatatttgagttctttaatattaattaa 28711110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 34114547 - 34114610
Alignment:
Q  163 ttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaa 226  Q
    |||||||||||||||||||||||||| ||| ||||||||| ||||||| || ||||||||||||    
T  34114547 ttttgtttcaagtttcacaattttagtttctttgttcatagttgagtttttaaatattaattaa 34114610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 34168325 - 34168424
Alignment:
Q  163 ttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaatttaccactaaacaagcagatgaggtttctggagga 262  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||| | |||| |||||||||    ||| |||||| ||||||||| ||| || |||||    
T  34168325 ttttgattcaagtttcacaattttagtttctttgttcatatttgagctctttattattaatta----acctctaaactagcagatgaagttccttgagga 34168420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 34119041 - 34119106
Alignment:
Q  163 ttttgtttcaagtttcacaattttagcttcctt-gttcatatttgagttatttaatattaattaat 227  Q
    ||||| |||||||||||||||||||  || ||| ||||||||||||||| ||||||||||||||||    
T  34119041 ttttgattcaagtttcacaattttaattttctttgttcatatttgagttctttaatattaattaat 34119106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 34146200 - 34146265
Alignment:
Q  163 ttttgtttcaagtttcacaattttagcttcctt-gttcatatttgagttatttaatattaattaat 227  Q
    ||||| |||||||||||||||||||  || ||| ||||||||||||||| ||||||||||||||||    
T  34146200 ttttgattcaagtttcacaattttaattttctttgttcatatttgagttctttaatattaattaat 34146265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 34158816 - 34158881
Alignment:
Q  163 ttttgtttcaagtttcacaattttagcttcctt-gttcatatttgagttatttaatattaattaat 227  Q
    ||||| |||||||||||||||||||  || ||| ||||||||||||||| ||||||||||||||||    
T  34158816 ttttgattcaagtttcacaattttaattttctttgttcatatttgagttctttaatattaattaat 34158881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 34135898 - 34135834
Alignment:
Q  159 atgcttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaat 223  Q
    ||||||||| |||||||||||||||||||| ||| ||    ||||||||||| ||||||||||||    
T  34135898 atgcttttgattcaagtttcacaattttagtttctttccgtatatttgagttctttaatattaat 34135834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 32683181 - 32683235
Alignment:
Q  172 aagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaa 226  Q
    |||||||| | |||||| ||| ||||| ||||||||||| |||||||||||||||    
T  32683181 aagtttcatacttttagtttctttgtttatatttgagttctttaatattaattaa 32683235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 34169531 - 34169657
Alignment:
Q  29 tgtccatatctgagttcttcaacgtaaatctctatatatgcagaattcattggtgaagatgtcgcatgatgatgtccttgctgaaattaaaagcggcatg 128  Q
    |||| |||| ||||||||| ||  | ||||||||||   |||||| ||  ||| ||||||||  |||| || |||| ||||||||||| |||||||||||    
T  34169531 tgtcaatatttgagttctttaagattaatctctatactagcagaagtcggtggcgaagatgttacatgttgctgtcattgctgaaattcaaagcggcatg 34169630  T
Q  129 aaaaaggcgaactgtgcgtttgattta 155  Q
    ||||| | ||| ||||| | |||||||    
T  34169631 aaaaatgtgaagtgtgcatatgattta 34169657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 34115456 - 34115528
Alignment:
Q  83 gaagatgtcgcatgatgatgtccttgctgaaattaaaagcggcatgaaaaaggcgaactgtgcgtttgattta 155  Q
    ||||||||| |||| ||||||  |||||||||||  |||||||||||| || ||||| ||||| | |||||||    
T  34115456 gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgattta 34115528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 151 - 369
Target Start/End: Original strand, 7214 - 7432
Alignment:
Q  151 atttatcgatgcttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaatttaccactaaacaagcagatgag 250  Q
    ||||||||||||||||| |||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||   |||| ||||||||||    
T  7214 atttatcgatgcttttgattcaagtttcacaattttagttttcttcttcatatctgagttatttaatattaattaatttaccttcaaaccagcagatgag 7313  T
Q  251 gtttctggaggatgtgttgatttgcaaggcttaacttgaaaaggagctagctgctaaacatcaaaaagataactctggaattcaaaaggtgagagcttca 350  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||  || || ||||||| ||| |||| ||    
T  7314 gtttctagaggatgtgttgacttgcaaggctgaacttgaaaaggagctagctgctaaacatcaaaaggataacattgaaagtcaaaagctgatagctgca 7413  T
Q  351 cttcaaaagaggatcgatg 369  Q
    |||||||||||||||||||    
T  7414 cttcaaaagaggatcgatg 7432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 7013 - 7155
Alignment:
Q  10 tcgaagaatattagttccctgtccatatctgagttcttcaacgtaaatctctatatatgcagaattcattggtgaagatgtcgcatgatgatgtccttgc 109  Q
    ||||| ||||||||||   | ||||||||||||||||||||  | ||||| ||||| ||||||| | | |||   |||||||||||||||||||| | ||    
T  7013 tcgaacaatattagttatgtttccatatctgagttcttcaatattaatctgtatatctgcagaagttagtggcagagatgtcgcatgatgatgtcgtagc 7112  T
Q  110 tgaaattaaaagcggcatgaaaaaggcgaactgtgcgtttgat 152  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  7113 tgaaattaaaagcggcttgaaaaaggcgaagtgtgcgtttgat 7155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 38648691 - 38648623
Alignment:
Q  159 atgcttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaat 227  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||    
T  38648691 atgcttttgattcaagtttcacaattttagtttctttgttcatatttgaattctttaatattaattaat 38648623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1113 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 1880 - 1798
Alignment:
Q  163 ttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaatttaccactaaacaagcag 245  Q
    ||||| ||||||||| ||| |||||| ||| ||||||||||||||||| |||||| ||||||||||  || |||||| |||||    
T  1880 ttttgattcaagttttacagttttagtttctttgttcatatttgagttctttaatgttaattaattatcctctaaaccagcag 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 1737 - 1819
Alignment:
Q  163 ttttgtttcaagtttcacaattttagcttccttgttcatatttgagttatttaatattaattaatttaccactaaacaagcag 245  Q
    ||||| ||||||||| ||| |||||| ||| ||||||||||||||||| |||||| ||||||||||  || |||||| |||||    
T  1737 ttttgattcaagttttacagttttagtttctttgttcatatttgagttctttaatgttaattaattatcctctaaaccagcag 1819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University