View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13819_low_3 (Length: 297)
Name: NF13819_low_3
Description: NF13819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13819_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 12819443 - 12819696
Alignment:
| Q |
4 |
tatcctagggtactatgcagtattattcatatcgggtgcaatgatgagttatgaatttagtctcaagctgttaaattaaagtcataagtttgtgcttctt |
103 |
Q |
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| T |
12819443 |
tatcatagcgtactatgcagtattattcatatcgggtgcaatgatgagttatgaatttagtctcaagctgttaaattaaagtcataagtttgtgcttctt |
12819542 |
T |
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| Q |
104 |
gcagcagtagccatcaattcaagtaaatcattgtcaatcacaatcgcaaaactaaccgaaaaatgcaggcaattaagcagcatctagtgaatgaaaaatg |
203 |
Q |
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| T |
12819543 |
gcagcagtagccatcaattcaagtaaatcattgacaatcacaatcgcaaatctaaccgaaaaatgcaggcaatgca-caacatctagtgaatgaaaaatg |
12819641 |
T |
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| Q |
204 |
gtttatatcacaagaaatttaagtcaacatacatgaattcaaataaattcgaaca |
258 |
Q |
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| T |
12819642 |
gtttatatcacaagaaatttaagtcaacatacatgaattcaaataaattcaaaca |
12819696 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Original strand, 29820919 - 29820948
Alignment:
| Q |
229 |
aacatacatgaattcaaataaattcgaaca |
258 |
Q |
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| T |
29820919 |
aacatacatgaattcaaataaattcgaaca |
29820948 |
T |
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