View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13819_low_4 (Length: 247)

Name: NF13819_low_4
Description: NF13819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13819_low_4
NF13819_low_4
[»] chr4 (6 HSPs)
chr4 (7-231)||(46175513-46175737)
chr4 (27-86)||(28614789-28614848)
chr4 (36-86)||(21952987-21953037)
chr4 (130-159)||(54575515-54575544)
chr4 (123-155)||(3891713-3891745)
chr4 (123-159)||(7367966-7368002)
[»] chr8 (3 HSPs)
chr8 (29-86)||(31875576-31875633)
chr8 (52-86)||(30987972-30988006)
chr8 (123-152)||(5349505-5349534)
[»] chr5 (10 HSPs)
chr5 (30-83)||(11700362-11700415)
chr5 (46-86)||(32172702-32172742)
chr5 (47-86)||(11457148-11457187)
chr5 (30-84)||(3280697-3280751)
chr5 (116-158)||(9174931-9174973)
chr5 (52-86)||(38047860-38047894)
chr5 (52-86)||(40499707-40499741)
chr5 (29-85)||(2569677-2569733)
chr5 (116-152)||(7705917-7705953)
chr5 (126-158)||(14364347-14364379)
[»] chr1 (10 HSPs)
chr1 (29-86)||(11639397-11639454)
chr1 (46-86)||(17628648-17628688)
chr1 (52-86)||(17631083-17631117)
chr1 (114-152)||(29045852-29045890)
chr1 (29-86)||(1662605-1662662)
chr1 (54-86)||(11560543-11560575)
chr1 (23-83)||(19412581-19412641)
chr1 (116-152)||(30013998-30014034)
chr1 (121-153)||(37617383-37617415)
chr1 (54-86)||(45327637-45327669)
[»] chr3 (5 HSPs)
chr3 (123-159)||(31615472-31615508)
chr3 (123-156)||(32582859-32582892)
chr3 (53-86)||(37273190-37273223)
chr3 (46-86)||(31010451-31010491)
chr3 (116-152)||(51929856-51929892)
[»] chr7 (6 HSPs)
chr7 (46-84)||(941589-941627)
chr7 (46-84)||(29290382-29290420)
chr7 (52-86)||(47427284-47427318)
chr7 (121-158)||(20526566-20526603)
chr7 (29-86)||(33645942-33645999)
chr7 (46-86)||(44686979-44687019)
[»] chr6 (4 HSPs)
chr6 (52-86)||(27857413-27857447)
chr6 (52-86)||(32917252-32917286)
chr6 (29-86)||(9027610-9027667)
chr6 (46-87)||(33284292-33284333)
[»] chr2 (6 HSPs)
chr2 (29-83)||(1160655-1160709)
chr2 (53-86)||(9878663-9878696)
chr2 (29-86)||(11063520-11063577)
chr2 (123-160)||(23974404-23974441)
chr2 (46-86)||(34652017-34652057)
chr2 (28-84)||(44606093-44606149)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 46175737 - 46175513
Alignment:
Q  7 cataggcagctattacagaaaacttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagctagctctctagaatagtctaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46175737 cataggcagctattacagaaaacttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagctagctctctagaatagtctaa 46175638  T
Q  107 catgttttcatgctaatagatatactcaaataagtcaatccaaacataccctacatgaaataccatagcaaaaactatatagtggaagattgagctctca 206  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46175637 cacgttttcatgctaatagatatactcaaataagtcaatccaaacataccctaaatgaaataccatagcaaaaactatatagtggaagattgagctctca 46175538  T
Q  207 tgaactagttcaacacattaaaaga 231  Q
    |||||||||||||||||||||||||    
T  46175537 tgaactagttcaacacattaaaaga 46175513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 28614848 - 28614789
Alignment:
Q  27 aacttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||||||| | || ||||  ||||||||| ||||||||| |||||||||||||||    
T  28614848 aacttatgaaaataagctgaaaagagcttatggatatgtcataaattgtttccataagct 28614789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 21952987 - 21953037
Alignment:
Q  36 aaattaactaaaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    |||| |||||||||| | ||||||| |||||||||||| ||||||||||||    
T  21952987 aaataaactaaaaacaggttatggacatgtcataagttctttccataagct 21953037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 54575544 - 54575515
Alignment:
Q  130 actcaaataagtcaatccaaacatacccta 159  Q
    ||||||||||||||||||||||||||||||    
T  54575544 actcaaataagtcaatccaaacatacccta 54575515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 3891713 - 3891745
Alignment:
Q  123 tagatatactcaaataagtcaatccaaacatac 155  Q
    |||||| ||||||||||||||||||||||||||    
T  3891713 tagataaactcaaataagtcaatccaaacatac 3891745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 7368002 - 7367966
Alignment:
Q  123 tagatatactcaaataagtcaatccaaacatacccta 159  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  7368002 tagataaactcaaataagtcaatccaaacagacccta 7367966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 31875633 - 31875576
Alignment:
Q  29 cttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||||| |  | |||| |||||||||| |||||||||||||||||||||||||    
T  31875633 cttatgaaaataagttgaaaatggcttatggacatgtcataagttgtttccataagct 31875576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 30988006 - 30987972
Alignment:
Q  52 gcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||| |||||||||||||||||||||||||    
T  30988006 gcttatggacatgtcataagttgtttccataagct 30987972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 5349534 - 5349505
Alignment:
Q  123 tagatatactcaaataagtcaatccaaaca 152  Q
    ||||||||||||||||||||||||||||||    
T  5349534 tagatatactcaaataagtcaatccaaaca 5349505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 11700415 - 11700362
Alignment:
Q  30 ttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataa 83  Q
    |||||||||| | || ||||| ||||||||| ||||||||||||||||||||||    
T  11700415 ttatgaaaataatctgaaaacagcttatggacatgtcataagttgtttccataa 11700362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 32172702 - 32172742
Alignment:
Q  46 aaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  32172702 aaaatggcttatggacatgtcataagttgtttccataagct 32172742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 11457148 - 11457187
Alignment:
Q  47 aaacggcttatggagatgtcataagttgtttccataagct 86  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  11457148 aaacagcttatggacatgtcataagttgtttccataagct 11457187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 3280751 - 3280697
Alignment:
Q  30 ttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataag 84  Q
    |||||||||| |||||||||  ||||||| |||||||||||| ||||| ||||||    
T  3280751 ttatgaaaataaactaaaaagagcttatgaagatgtcataagctgttttcataag 3280697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 9174931 - 9174973
Alignment:
Q  116 atgctaatagatatactcaaataagtcaatccaaacataccct 158  Q
    |||||||||||||  ||||||||||||||||||||||| ||||    
T  9174931 atgctaatagataagctcaaataagtcaatccaaacatgccct 9174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 38047894 - 38047860
Alignment:
Q  52 gcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||| |||||||||||||||||||||||||    
T  38047894 gcttatggacatgtcataagttgtttccataagct 38047860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 40499741 - 40499707
Alignment:
Q  52 gcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||| |||||||||||||||||||||||||    
T  40499741 gcttatggacatgtcataagttgtttccataagct 40499707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 2569733 - 2569677
Alignment:
Q  29 cttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagc 85  Q
    |||||||| || |||| ||||| ||||||||| |||||||||| | |||||||||||    
T  2569733 cttatgaatataaacttaaaacagcttatggacatgtcataagctatttccataagc 2569677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 7705953 - 7705917
Alignment:
Q  116 atgctaatagatatactcaaataagtcaatccaaaca 152  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  7705953 atgctagtagatatgctcaaataagtcaatccaaaca 7705917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 14364347 - 14364379
Alignment:
Q  126 atatactcaaataagtcaatccaaacataccct 158  Q
    ||||||||||||||||||||||| |||||||||    
T  14364347 atatactcaaataagtcaatccagacataccct 14364379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 11639454 - 11639397
Alignment:
Q  29 cttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||||| | |||||||| ||||||||| |||||||||| ||||| ||||||||    
T  11639454 cttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagct 11639397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 17628648 - 17628688
Alignment:
Q  46 aaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  17628648 aaaacagcttatggacatgtcataagttgtttccataagct 17628688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 17631117 - 17631083
Alignment:
Q  52 gcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||| |||||||||||||||||||||||||    
T  17631117 gcttatggacatgtcataagttgtttccataagct 17631083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 29045890 - 29045852
Alignment:
Q  114 tcatgctaatagatatactcaaataagtcaatccaaaca 152  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  29045890 tcatgctagtagataaactcaaataagtcaatccaaaca 29045852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 1662605 - 1662662
Alignment:
Q  29 cttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||||| |||||||||    ||||||| |||||||||||||||||| ||||||    
T  1662605 cttatgaaaataaactaaaaatattttatggacatgtcataagttgtttccgtaagct 1662662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 11560575 - 11560543
Alignment:
Q  54 ttatggagatgtcataagttgtttccataagct 86  Q
    ||||||| |||||||||||||||||||||||||    
T  11560575 ttatggatatgtcataagttgtttccataagct 11560543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 19412641 - 19412581
Alignment:
Q  23 agaaaacttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataa 83  Q
    ||||| |||||| |||| | | |||| | ||||||||| ||||||||||||||||||||||    
T  19412641 agaaagcttatggaaataagccaaaatcagcttatggacatgtcataagttgtttccataa 19412581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 30014034 - 30013998
Alignment:
Q  116 atgctaatagatatactcaaataagtcaatccaaaca 152  Q
    |||||| |||||| |||||||||||||||||||||||    
T  30014034 atgctagtagataaactcaaataagtcaatccaaaca 30013998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 37617415 - 37617383
Alignment:
Q  121 aatagatatactcaaataagtcaatccaaacat 153  Q
    |||||||| ||||||||||||||||||||||||    
T  37617415 aatagataaactcaaataagtcaatccaaacat 37617383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 45327637 - 45327669
Alignment:
Q  54 ttatggagatgtcataagttgtttccataagct 86  Q
    ||||||| |||||||||||||||||||||||||    
T  45327637 ttatggacatgtcataagttgtttccataagct 45327669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 31615508 - 31615472
Alignment:
Q  123 tagatatactcaaataagtcaatccaaacatacccta 159  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31615508 tagataaactcaaataagtcaatccaaacatacccta 31615472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 32582859 - 32582892
Alignment:
Q  123 tagatatactcaaataagtcaatccaaacatacc 156  Q
    |||||| |||||||||||||||||||||||||||    
T  32582859 tagataaactcaaataagtcaatccaaacatacc 32582892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 37273190 - 37273223
Alignment:
Q  53 cttatggagatgtcataagttgtttccataagct 86  Q
    |||||||| |||||||||||||||||||||||||    
T  37273190 cttatggacatgtcataagttgtttccataagct 37273223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 31010451 - 31010491
Alignment:
Q  46 aaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||| ||||||||| ||||||||||||||||| |||||||    
T  31010451 aaaacagcttatggacatgtcataagttgtttctataagct 31010491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 51929856 - 51929892
Alignment:
Q  116 atgctaatagatatactcaaataagtcaatccaaaca 152  Q
    |||||||||||||  ||||||||||||||||||||||    
T  51929856 atgctaatagataagctcaaataagtcaatccaaaca 51929892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 941589 - 941627
Alignment:
Q  46 aaaacggcttatggagatgtcataagttgtttccataag 84  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  941589 aaaactgcttatggacatgtcataagttgtttccataag 941627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 29290382 - 29290420
Alignment:
Q  46 aaaacggcttatggagatgtcataagttgtttccataag 84  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  29290382 aaaacagcttatggacatgtcataagttgtttccataag 29290420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 47427318 - 47427284
Alignment:
Q  52 gcttatggagatgtcataagttgtttccataagct 86  Q
    |||||| ||||||||||||||||||||||||||||    
T  47427318 gcttatagagatgtcataagttgtttccataagct 47427284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 20526566 - 20526603
Alignment:
Q  121 aatagatatactcaaataagtcaatccaaacataccct 158  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  20526566 aatagataaactcaaataagtcaatccaaacaaaccct 20526603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 33645999 - 33645942
Alignment:
Q  29 cttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    |||||| |||| | ||||||||  ||||| || |||||||||||||||||||||||||    
T  33645999 cttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagct 33645942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 44686979 - 44687019
Alignment:
Q  46 aaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||| ||| ||||| |||||||||||||||||||||||||    
T  44686979 aaaacagctcatggacatgtcataagttgtttccataagct 44687019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 27857413 - 27857447
Alignment:
Q  52 gcttatggagatgtcataagttgtttccataagct 86  Q
    |||||||||||||||||||||||||| ||||||||    
T  27857413 gcttatggagatgtcataagttgttttcataagct 27857447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 32917252 - 32917286
Alignment:
Q  52 gcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||| |||||||||||||||||||||||||    
T  32917252 gcttatggacatgtcataagttgtttccataagct 32917286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 9027610 - 9027667
Alignment:
Q  29 cttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||||| | || |||||  |||||||| |||||||||||| ||||||||||||    
T  9027610 cttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagct 9027667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 33284292 - 33284333
Alignment:
Q  46 aaaacggcttatggagatgtcataagttgtttccataagcta 87  Q
    ||||| ||||||||| |||||||||||||||||| |||||||    
T  33284292 aaaacagcttatggaaatgtcataagttgtttccctaagcta 33284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 1160709 - 1160655
Alignment:
Q  29 cttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataa 83  Q
    |||||| |||| ||||||||||  |||||||| |||||||| |||||||||||||    
T  1160709 cttatggaaataaactaaaaacaacttatggacatgtcataggttgtttccataa 1160655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 9878696 - 9878663
Alignment:
Q  53 cttatggagatgtcataagttgtttccataagct 86  Q
    |||||||| |||||||||||||||||||||||||    
T  9878696 cttatggacatgtcataagttgtttccataagct 9878663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 11063520 - 11063577
Alignment:
Q  29 cttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||||||||| | ||||||||  |||||||| |||||||||  ||||||||||||||    
T  11063520 cttatgaaaataagctaaaaacaacttatggacatgtcataatatgtttccataagct 11063577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 23974441 - 23974404
Alignment:
Q  123 tagatatactcaaataagtcaatccaaacataccctac 160  Q
    |||||| || ||||||||||||||||||||||||||||    
T  23974441 tagataaacccaaataagtcaatccaaacataccctac 23974404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 34652057 - 34652017
Alignment:
Q  46 aaaacggcttatggagatgtcataagttgtttccataagct 86  Q
    ||||| ||||||||| ||||||||||||||||| |||||||    
T  34652057 aaaacagcttatggacatgtcataagttgtttctataagct 34652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 44606149 - 44606093
Alignment:
Q  28 acttatgaaaattaactaaaaacggcttatggagatgtcataagttgtttccataag 84  Q
    |||||||||||| | || |||||  |||||||| |||||||||||||||| ||||||    
T  44606149 acttatgaaaatcagctgaaaacaacttatggacatgtcataagttgttttcataag 44606093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University