View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13819_low_5 (Length: 244)
Name: NF13819_low_5
Description: NF13819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13819_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 40285391 - 40285613
Alignment:
| Q |
4 |
agtgagaagaacttgacctttataaccaacggagctcaatannnnnnnnaaaagtaataaataatcaaaactggcaatgtttgattgattacaattgagt |
103 |
Q |
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| T |
40285391 |
agtgataagaacttgacctttataaccaacggagttcaatattttttttaaaagtaataaataatcaaaactaacaatgtttgattgattacaattgaat |
40285490 |
T |
|
| Q |
104 |
ttcttacagtgtcaagagaatcagcaccaagttctgaaaacttggtttctggggtaagcttggtttcaggagtcaaagcaagttgtttcctcacaatttt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40285491 |
ttcttacagtgtcaagagaatcagcaccaagttctgaaaacttggtttctggggtaagcttggtttcaggagtcaaagcaagttgtttcctcacaatttt |
40285590 |
T |
|
| Q |
204 |
gctcactttctccactgtctcag |
226 |
Q |
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||||||||||||||||||||||| |
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| T |
40285591 |
gctcactttctccactgtctcag |
40285613 |
T |
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