View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13819_low_6 (Length: 218)

Name: NF13819_low_6

Description: NF13819

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13819_low_6

[»] chr6 (2 HSPs)

Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 169; E-Value: 8e-91

Query Start/End: Original strand, 18 - 207

Target Start/End: Complemental strand, 15953610 - 15953421

Alignment:

Q	18	gtataatggtcgtttttgcaatgacaatgttacaataatatgaaacaataatactatatgttattattcnnnnnnncaaatactatatgttattgttcat	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15953610	gtataatggtcgtttttgcaatgacaatgttacaataatatgaaacaataatactatatgttattattcaaaaaaacaaatactatatgttattgttcat	15953511	T

Q	118	attataattttataataaaactttagtttgataatccataatttaattatatgaaacttactatttaaatcaaacaatatagagtataat	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15953510	attataattttataataaaactttagtttgataatccataatttaattatatgaaacttactatttaaatcaaacaatatagagtataat	15953421	T

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Target: chr6; HSP #2

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 21 - 54

Target Start/End: Original strand, 16399236 - 16399269

Alignment:

Q	21	taatggtcgtttttgcaatgacaatgttacaata	54	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16399236	taatgatcgtttttgcaatgacaatgttacaata	16399269	T

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