View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1382-INSERTION-2 (Length: 847)

Name: NF1382-INSERTION-2
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1382-INSERTION-2
NF1382-INSERTION-2
[»] chr8 (3 HSPs)
chr8 (291-847)||(21271663-21272226)
chr8 (8-289)||(21271327-21271610)
chr8 (175-214)||(12573875-12573914)
[»] chr1 (4 HSPs)
chr1 (291-348)||(15968083-15968140)
chr1 (168-235)||(15967880-15967947)
chr1 (167-217)||(11990697-11990746)
chr1 (168-206)||(29492740-29492778)
[»] chr4 (1 HSPs)
chr4 (175-228)||(56252460-56252513)
[»] chr6 (4 HSPs)
chr6 (321-372)||(6807814-6807865)
chr6 (291-357)||(24069167-24069233)
chr6 (290-357)||(24065534-24065601)
chr6 (291-348)||(13469704-13469761)
[»] scaffold0050 (1 HSPs)
scaffold0050 (318-356)||(76065-76103)
[»] chr5 (2 HSPs)
chr5 (175-237)||(30424319-30424381)
chr5 (319-372)||(27073765-27073818)
[»] chr3 (2 HSPs)
chr3 (168-215)||(33682288-33682335)
chr3 (460-533)||(10815677-10815751)
[»] chr2 (2 HSPs)
chr2 (468-534)||(23693061-23693127)
chr2 (319-372)||(3531391-3531443)


Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 291 - 847
Target Start/End: Original strand, 21271663 - 21272226
Alignment:
Q  291 aaatagagggtttatcctaccccttattgactataaataccaaccttgagagcattcttagggcatctcataaacaatctaaccctagtctgatagtcct 390  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21271663 aaatagagggtttatccaaccgcttattgactataaataccaaccttgagagcattcttagggcatctcataaacaatctaaccctagtctgatagtcgt 21271762  T
Q  391 actttctgcactacctcatttaaaaaaccataacacataacacataaaatctgagtcgcatccttctccactacctcatcgccatgaagaccgaatcctc 490  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21271763 actttcttcactacctcatttaaaaaaccataacacataacacataaaatctgagtcgcatccttctccactacctcatcgccatgatgaccgaatcctc 21271862  T
Q  491 aaatcacgacaccgtcgaggcgataaaaattcaaatcgcacaaaaccaacatcaacatcaacttcaatttttctacggagcaatcagatgactaacataa 590  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21271863 aaatcacgacaccatcgaggcgataaaaattcaaatctcacaaaaccaacatcaacatcaacttcaatttttctacggagcaatcagatgactaacataa 21271962  T
Q  591 agctagccagattgatcaagttgttctttaattacgagaataatccaggtgccaaaatcccatgttacgt--gaatacgcttgattaggcggccttgttc 688  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  21271963 agctggccagattgatcaagttgttctttaattacgagaataatccaggtgccaaaatcccatgttacgtgagaatacgcttgattaggcggccttgttc 21272062  T
Q  689 agaaatattgatcctatgaagatgacgccagatacctcgaaatccaggttttatgagtccaatattattcaagtgtttat-----cacgtggtgctttaa 783  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     |||||||||||||||    
T  21272063 agaaatattgatcctatgaagatgacgccagatacctcgaaatccaggttttatgagtccaatattattcaagtgtttgtcgatgcacgtggtgctttaa 21272162  T
Q  784 ttttgaattcatatttgccatatttaaattgatcagcacatgataccttgaaaaattccaaaag 847  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21272163 ttttgaattcatatttgccatatttaaattgatcagcacatgataccttgaaaaattccaaaag 21272226  T

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Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 21271327 - 21271610
Alignment:
Q  8 attaacagcacctatttcaaaccaattgatttgagtgcaaaaacattaactgctata--ctctatagccaaagataaatggcagttgacaaataataata 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |    
T  21271327 attaacagcacctatttcaaaccaattgatttgagtgcaaaaacattaactgctatatactctatagccaaagataaatggcagttgacaaataataaaa 21271426  T
Q  106 atatgtcttataatttaattccaactgttattccaaaacagactaagatggtagaaccaccatggaccaggaaaacccggataaaggacacaatgccctt 205  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21271427 atatgacttataatttcattccaactgttattctaaaacagactaagatggtagaaccaccatggaccgggaaaacccggataaaggacacaatgccctt 21271526  T
Q  206 cataagggcccaaatgagcataaccgcccttccgaaatagactaaggcagcgcctttgtagacaccaccaataagcaggttcta 289  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  21271527 cataagggcccaaatgagcataaccacccttccgaaatagactaaggcggcgcctttatagacaccaccaataagcaggttcta 21271610  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 12573914 - 12573875
Alignment:
Q  175 ggaaaacccggataaaggacacaatgcccttcataagggc 214  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  12573914 ggaaaacccggataaaggacacaaggcctttcataagggc 12573875  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 15968083 - 15968140
Alignment:
Q  291 aaatagagggtttatcctaccccttattgactataaataccaaccttgagagcattct 348  Q
    ||||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||    
T  15968083 aaatagagggtttatccaacttcctattgactataaataccaaccttgagagcattct 15968140  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 15967880 - 15967947
Alignment:
Q  168 tggaccaggaaaacccggataaaggacacaatgcccttcataagggcccaaatgagcataaccgccct 235  Q
    |||||| |||||||| ||||||||||||  |  |||||||||||||| ||||||| ||||| ||||||    
T  15967880 tggaccgggaaaaccaggataaaggacatcacacccttcataagggctcaaatgaacataaacgccct 15967947  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 11990697 - 11990746
Alignment:
Q  167 atggaccaggaaaacccggataaaggacacaatgcccttcataagggccca 217  Q
    ||||||| ||||||||||||| |||||||||| ||||||| ||||||||||    
T  11990697 atggaccgggaaaacccggat-aaggacacaaggcccttcctaagggccca 11990746  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 29492740 - 29492778
Alignment:
Q  168 tggaccaggaaaacccggataaaggacacaatgcccttc 206  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  29492740 tggaccgggaaaacccggataaatgacacaatgcccttc 29492778  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 56252513 - 56252460
Alignment:
Q  175 ggaaaacccggataaaggacacaatgcccttcataagggcccaaatgagcataa 228  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  56252513 ggaaaacccggataaaggacataatgcccttcacaagggctcaaatgaacataa 56252460  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 6807814 - 6807865
Alignment:
Q  321 ctataaataccaaccttgagagcattcttagggcatctcataaacaatctaa 372  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||| |||||    
T  6807814 ctataaatactaaccttgagagcactctcagggcatctcataaacagtctaa 6807865  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 24069167 - 24069233
Alignment:
Q  291 aaatagagggtttatcctaccccttattgactataaataccaaccttgagagcattcttagggcatc 357  Q
    ||||||||| ||||||| ||||  ||| ||||||||||| |||||||||||||||||| | ||||||    
T  24069167 aaatagaggatttatccaaccctctatcgactataaatagcaaccttgagagcattctcaaggcatc 24069233  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 24065534 - 24065601
Alignment:
Q  290 taaatagagggtttatcctaccccttattgactataaataccaaccttgagagcattcttagggcatc 357  Q
    ||||||||| |||||||| ||||  ||| ||||||||||| ||||| |||||||||||| | ||||||    
T  24065534 taaatagagtgtttatccaaccctctatcgactataaatagcaaccatgagagcattctcaaggcatc 24065601  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 13469704 - 13469761
Alignment:
Q  291 aaatagagggtttatcctaccccttattgactataaataccaaccttgagagcattct 348  Q
    ||||||| ||||||||  |||| ||| ||||||||||||| |||||||||||| ||||    
T  13469704 aaatagaaggtttatctaaccctttaatgactataaatactaaccttgagagccttct 13469761  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 76103 - 76065
Alignment:
Q  318 tgactataaataccaaccttgagagcattcttagggcat 356  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  76103 tgactataaatactaaccttgagagcattcttagggcat 76065  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 30424381 - 30424319
Alignment:
Q  175 ggaaaacccggataaaggacacaatgcccttcataagggcccaaatgagcataaccgcccttc 237  Q
    |||||||||||||||||||||||||| ||||||||||| | || |||| ||||| | ||||||    
T  30424381 ggaaaacccggataaaggacacaatgtccttcataaggactcagatgatcataagcacccttc 30424319  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 27073765 - 27073818
Alignment:
Q  319 gactataaataccaaccttgagagcattcttagggcatctcataaacaatctaa 372  Q
    |||||||||||||| ||||||||||||||| | ||||||| |||| || |||||    
T  27073765 gactataaataccacccttgagagcattctcaaggcatctaataatcagtctaa 27073818  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 33682288 - 33682335
Alignment:
Q  168 tggaccaggaaaacccggataaaggacacaatgcccttcataagggcc 215  Q
    |||||| ||||||| ||| |||||||||||| ||||||||||||||||    
T  33682288 tggaccgggaaaacacgggtaaaggacacaacgcccttcataagggcc 33682335  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 460 - 533
Target Start/End: Complemental strand, 10815751 - 10815677
Alignment:
Q  460 actacctcatcgcc-atgaagaccgaatcctcaaatcacgacaccgtcgaggcgataaaaattcaaatcgcacaa 533  Q
    |||||||||||||| |||| || |||||||||  |||||||| ||||| |||| || ||| ||||||||||||||    
T  10815751 actacctcatcgcccatgatgatcgaatcctccgatcacgacgccgtcaaggctatgaaacttcaaatcgcacaa 10815677  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 468 - 534
Target Start/End: Original strand, 23693061 - 23693127
Alignment:
Q  468 atcgccatgaagaccgaatcctcaaatcacgacaccgtcgaggcgataaaaattcaaatcgcacaaa 534  Q
    ||||||| || ||||||||||||  |||||||| ||||| |||| || ||| |||||||||||||||    
T  23693061 atcgccacgatgaccgaatcctccgatcacgacgccgtcaaggctatgaaacttcaaatcgcacaaa 23693127  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 3531443 - 3531391
Alignment:
Q  319 gactataaataccaaccttgagagcattcttagggcatctcataaacaatctaa 372  Q
    |||||||||||||| |||||||| |||||| | ||||||||||||||| |||||    
T  3531443 gactataaatacca-ccttgagatcattctcaaggcatctcataaacagtctaa 3531391  T

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