View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1382-INSERTION-3 (Length: 446)
Name: NF1382-INSERTION-3
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382-INSERTION-3 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Original strand, 11395477 - 11395915
Alignment:
| Q |
8 |
ctcctcacgtttattccaggttcacttcacgtcaatccaagtcggaaacactgtttatacttatttcattcttatataacaaattctagattccaatttt |
107 |
Q |
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| T |
11395477 |
ctcctcacgtttattccaggttcacttcacttcaatccaagtcggaaacactgtttatacttatttcattcttatataacaaattctagattccaatttt |
11395576 |
T |
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| Q |
108 |
gaacttcgttcatattttcaaatgcaaccgttccagtatgattttagcttattttttacttccgcgttttcgagtttagtatattctgcgtaacgctatg |
207 |
Q |
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| T |
11395577 |
gaacttcgttcatattttcaaatgcaaccgttcgagtatgattttagcttattttttacttcctcgttttcggatttagtatattctgcgtaacgctatg |
11395676 |
T |
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| Q |
208 |
ttcgaatcatgtgaaattaatggatctagaaatgaagttagatatcgcgatgaactgtgatatgcnnnnnnnnncattctacggagttttaaatttctgt |
307 |
Q |
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| T |
11395677 |
ttcgaatcatgtgaaattaatggatctagaaatgaagttagatatcgcaatgaactgtgatatgctttttttttcattctacggagttttaaatttctgt |
11395776 |
T |
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| Q |
308 |
aattcaatgaatcttacttannnnnnngtgtggaatttgtgataggaagatgaacaatgcatccaatggatttcaagcctcgcaacatcgatcgcaacca |
407 |
Q |
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| T |
11395777 |
aattcaatgaatattacttatttttttgtgtggaatttgtgataggaagatgaacaatgcatccaatggatttcaagcctcgcaacatcgatcgcaaccg |
11395876 |
T |
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| Q |
408 |
tcgcatcgagatatagagtgagaaacagcgtatttgatt |
446 |
Q |
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| T |
11395877 |
tcgcatcgagatatagagtgagaaacagcatatttgatt |
11395915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 12849098 - 12849142
Alignment:
| Q |
178 |
cgagtttagtatattctgcgtaacgctatgttcgaatcatgtgaa |
222 |
Q |
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| T |
12849098 |
cgagtttagcttattctgcataacgctatgttcgaatcatgtgaa |
12849142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 11921642 - 11921598
Alignment:
| Q |
178 |
cgagtttagtatattctgcgtaacgctatgttcgaatcatgtgaa |
222 |
Q |
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| T |
11921642 |
cgagtttagcttattctgcataacgctatgtttgaatcatgtgaa |
11921598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 12848730 - 12848766
Alignment:
| Q |
8 |
ctcctcacgtttattccaggttcacttcacgtcaatc |
44 |
Q |
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| T |
12848730 |
ctcctcacgttttttccaggttcacttcacttcaatc |
12848766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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