View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_high_19 (Length: 273)
Name: NF13820_high_19
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 1556083 - 1556337
Alignment:
| Q |
1 |
gtcatctctactgaagacattgtattctcaaagggaatacaaaaattcgtatcagttatctgtttcttatcaatagtttacactattaaaagcatagtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1556083 |
gtcatctctactgaagacattgtattctcaaagggaatacaaaaattcgtatcagttatctgtttcttatcaatagtttacactattaaaagcatagtct |
1556182 |
T |
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| Q |
101 |
actatgtttatgtgtagtttggaattttatttatctcaataaagattttggtatgtggattttgcgg-tcatcaatgttattatgattggnnnnnnnnat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || |
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| T |
1556183 |
actatgtttatgtgtagtttggaattttatttatctcaataaagattttggtatgtggattttgcggctcatcaatgttattatgatagggtttttttat |
1556282 |
T |
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| Q |
200 |
agtttatattctcattgttggtccttttccattcttctttctttaacagaataat |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1556283 |
agtttatattctcattgttggtccttttccattcttctttctttaacagaataat |
1556337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 1460879 - 1460625
Alignment:
| Q |
1 |
gtcatctctactgaagacattgtattctcaaagggaatacaaaaattcgtatcagttatctgtttcttatcaatagtttacactattaaaagcatagtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460879 |
gtcatctctactgaagacattgtattctcaaagggaatacaaaaattcgtatcagttatctgtttcttatcaatagtttacactattaaaagcatagtct |
1460780 |
T |
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| Q |
101 |
actatgtttatgtgtagtttggaattttatttatctcaataaagattttggtatgtggattttgcgg-tcatcaatgttattatgattggnnnnnnnnat |
199 |
Q |
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| T |
1460779 |
actatgtttatgggtagtttggaattttatttatctcaataaagattttggtatgtggattttgcggctcatcaatgttattatgatcgg-gttttttat |
1460681 |
T |
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| Q |
200 |
agtttatattctcattgttggtccttttccatt-cttctttctttaacagaataat |
254 |
Q |
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| T |
1460680 |
agtttatattctcattgttggtccttttccattccttctttctttaacagaataat |
1460625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 1455769 - 1455517
Alignment:
| Q |
2 |
tcatctctactgaagacattgtattctcaaagggaatacaaaaattcgtatcagttatctgtttcttatcaatagtttacactattaaaagcatagtcta |
101 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1455769 |
tcatctctactgaagatattgtattctcaaaaggaatacaaaaattcatatcagttatctgtttcttatcaatagtttacactattaaaagcatagccta |
1455670 |
T |
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| Q |
102 |
ctatgtttatgtgtagtttggaattttatttatctcaataaagattttggtatgtggattttgcgg-tcatcaatgttattatgattggnnnnnnnnata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||| | ||| |
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| T |
1455669 |
ttatgtttatgtgtagtttggaattttatttatctcaataaaga-tttggtgtgtggattttgtggctcatcaatgttattatgatccg-gggttttata |
1455572 |
T |
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| Q |
201 |
gtttatattctcattgttggtccttttccatt-cttctttctttaacagaataat |
254 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1455571 |
gtttatattctcattgttggtccttttccattccttctttctttaacagaataat |
1455517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 1567576 - 1567828
Alignment:
| Q |
2 |
tcatctctactgaagacattgtattctcaaagggaatacaaaaattcgtatcagttatctgtttcttatcaatagtttacactattaaaagcatagtcta |
101 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1567576 |
tcatctctactgaagatattgtattctcaaaaggaatacaaaaattcatatcagttatctgtttcttatcaatagtttacactattaaaagcatagccta |
1567675 |
T |
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| Q |
102 |
ctatgtttatgtgtagtttggaattttatttatctcaataaagattttggtatgtggattttg-cggtcatcaatgttattatgattggnnnnnnnnata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||| ||||||||||||| | ||| |
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| T |
1567676 |
ttatgtttatgtgtagtttggaattttatttatctcaataaaga-tttggtgtgtggattttgttgctcattaatgttattatga-tccagtgttttata |
1567773 |
T |
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| Q |
201 |
gtttatattctcattgttggtccttttccatt-cttctttctttaacagaataat |
254 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1567774 |
gtttatattctcattgttggtccttttccattccttctttctttaacagaataat |
1567828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 1454252 - 1454103
Alignment:
| Q |
1 |
gtcatctctactgaagacattgtattctcaaagggaatacaaaaattcgtatcagttatctgtttcttatcaatagtttacactattaaaagcatagtct |
100 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||||| || | |||| || || |||||||| || | || ||| |||||||||||||||||||||||| |
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| T |
1454252 |
gtcatctctactgaggatgttgtattctcaaaaggaattcagagattcatagcaattatctgtgtcatttccatactttacactattaaaagcatagtct |
1454153 |
T |
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| Q |
101 |
actatgtttatgtgtagtttggaattttatt--tatctcaataaagattt |
148 |
Q |
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|| || |||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
1454152 |
acaatatttatgtgtagtttcgaattttatttatatctcaataaagattt |
1454103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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