View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_high_9 (Length: 367)
Name: NF13820_high_9
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 21683362 - 21683032
Alignment:
| Q |
20 |
attgagctgaaggtctgtgatagaagcaatgccaactccaacaagtaagaagaatagagagagtttaatattccggctgcacatagtagtaaaataattc |
119 |
Q |
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| T |
21683362 |
attgagctgaaggtctgtgatagaagcaatgccaactccaacaagtaagaagaatagagagagtttaatattccggctgcacatagtagtaaattaattc |
21683263 |
T |
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| Q |
120 |
acaatcagattaagcaatttagcatgaccatggtcagatttaatttcaatatcactaggaggggtctcatgactaatttgttacctgaactgcttcttta |
219 |
Q |
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| T |
21683262 |
acaatcagattaagcaatttagcatgaccatggtcagatttaatttcaatatcactaggaggggtctcatgactaatttgttacctgaactgcttcttta |
21683163 |
T |
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| Q |
220 |
ggaaaagggtttctagcataactgtgaatggtatgattgcaagttttgtcatctacaaaattaacattaaaatcaatatatacatcaaatgagtagttca |
319 |
Q |
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| T |
21683162 |
ggaaaagggtttctagcataactgtgaatggtatgattgcaagttttgtcatctacaaaattaacattaaaatcaatatatacatcaaatgagtagttca |
21683063 |
T |
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| Q |
320 |
atgcattatgcataccaatattaccaatgtt |
350 |
Q |
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| T |
21683062 |
atgcattatgcatacccatattaccaatgtt |
21683032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 40412240 - 40412319
Alignment:
| Q |
200 |
ttacctgaactgcttctttaggaaaagggtttctagcataactgtgaatggtatgattgcaagttttgtcatctacaaaa |
279 |
Q |
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| T |
40412240 |
ttacctgaattgtttctttaggaaaatggtttctaacattactgtgaatggtatgatcgcaagttttgtcatctgcaaaa |
40412319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 40412070 - 40412150
Alignment:
| Q |
20 |
attgagctgaaggtctgtgatagaagcaatgccaactccaacaagtaagaagaatagagagagtttaatattccggctgca |
100 |
Q |
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|||||| ||||| || |||||||| |||| ||||||||||||||||| | |||||||| || ||| || ||| ||||||| |
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| T |
40412070 |
attgagttgaagatcagtgatagaggcaacaccaactccaacaagtaataggaatagagtgaattttattttctggctgca |
40412150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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