View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_1 (Length: 608)
Name: NF13820_low_1
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Complemental strand, 4893932 - 4893494
Alignment:
| Q |
17 |
caaaagtcccttttgcttttggcaatggatcctaatgagcacatccttgtccaaaactttggcttctacatgtgggagagtttcattaataccactagca |
116 |
Q |
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| T |
4893932 |
caaaagtcccttttgcttttggcaatggatccttatgagcacatccttgtccaaaactttggcttctacatgtgggagagtttcattattaccactagca |
4893833 |
T |
|
| Q |
117 |
gcttcagagtcatcactgtttgatgagtcgtaacttagttgtggttcatcaaccgtcaccacagactgaacatgactatttttgttttgttcctctaata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4893832 |
acttcagagtcatcactgtttgatgagtcgtaacttagttgttgttcatcaaccgtcaccacagactgaacatgactatttttgttttgttcctctaata |
4893733 |
T |
|
| Q |
217 |
ccctcaaacgttcttggagctctttcacgtacttgattgcatctcctaggactgaagccttgtccatctgtagannnnnnnacaacataataaagtttac |
316 |
Q |
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| T |
4893732 |
ccctcaaacgttcttggagctctttcacgtacttgattgcatctcctaggactgaagccttgtccatctgtagatttttttacaacataataaagtttac |
4893633 |
T |
|
| Q |
317 |
ttagatgctaaaattcctataattaatagctacctatatagtagttgtaacaactttgcaccaattaattcacatcatatgaatatgaattgctgacatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4893632 |
ttagatgctaaaattcctataattaatagctacctatatagtagttgtaacaaccttgcaccaattaattcacatcatatgaatatgaattgctaacatg |
4893533 |
T |
|
| Q |
417 |
actatttaggtttggtttcatgtttagagtaactagagt |
455 |
Q |
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| T |
4893532 |
actatttaggtttggtttcatgtttagagcaactagagt |
4893494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 456 - 601
Target Start/End: Complemental strand, 4893466 - 4893322
Alignment:
| Q |
456 |
aattgattttgcatctaaaattgattttaaatagaggttaggatttatagcttttgagtctaaatgtgatcnnnnnnncacttaaatttgttgttcaaat |
555 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4893466 |
aattgattttgcatctaaaattgattttaaatagaggttaggatttatagcttttgagtctaaatgtgatctttttttcacttaaatttgttgttcaaat |
4893367 |
T |
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| Q |
556 |
caattctatataaatgtattaaaaacataaatcactttacattcat |
601 |
Q |
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| T |
4893366 |
caatt-tatgtaaatgtattaaaaacataaatcactttacattcat |
4893322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 4917377 - 4917113
Alignment:
| Q |
26 |
cttttgcttttggcaatggatcctaatgagcacatccttgtccaaaactttggcttctacatgtgggagagtttcattaataccactagcagcttcagag |
125 |
Q |
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|||||| |||||||| |||||||| ||||| || || ||| |||||| ||||||||| ||||| ||||||||||||||| || |||||||||| | ||| |
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| T |
4917377 |
cttttgtttttggcactggatccttatgagaacgtctttgcccaaaattttggcttccacatgagggagagtttcattattagcactagcagccttagaa |
4917278 |
T |
|
| Q |
126 |
tcatcactgtttgatgagtcgtaacttagttgtggttcatcaaccgtcaccacagactgaacatgactatttttgttttgttcctctaataccctcaaac |
225 |
Q |
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||||| | |||| || ||| |||| | |||| | || |||||| ||| ||| || | ||||||| ||||||||||| |||||||| ||||||| |
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| T |
4917277 |
ccatcatcactccatgactcataatttagcttcggtttgttaagcgtcactacaaactcaataggactattcttgttttgttcttctaatactctcaaac |
4917178 |
T |
|
| Q |
226 |
gttcttggagctctttcacgtacttgattgcatctcctaggactgaagccttgtccatctgtaga |
290 |
Q |
| |
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|||||||||||||||| || | |||||| ||||| |||| |||||||||||||||||||| |||| |
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| T |
4917177 |
gttcttggagctcttttacatgcttgatagcatcccctatgactgaagccttgtccatctataga |
4917113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 287
Target Start/End: Complemental strand, 4910322 - 4910061
Alignment:
| Q |
26 |
cttttgcttttggcaatggatcctaatgagcacatccttgtccaaaactttggcttctacatgtgggagagtttcattaataccactagcagcttcagag |
125 |
Q |
| |
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||||||||||||||| |||||||| |||||||| | |||||||||| |||||| || || || ||||||| ||||||| || |||||||||| | ||| |
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| T |
4910322 |
cttttgcttttggcactggatccttatgagcacgtttttgtccaaaattttggcatccacgtgagggagagattcattattagcactagcagccttagaa |
4910223 |
T |
|
| Q |
126 |
tcatcactgtttgatgagtcgtaacttagttgtggttcatcaaccgtcaccacagactgaacatgactatttttgttttgttcctctaataccctcaaac |
225 |
Q |
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||||| | |||| | |||| |||| | || | || |||||| ||||| | || ||||||||| ||||| | ||| |||||||| ||||||| |
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| T |
4910222 |
ccatcatcactccatgacttgtaaattagcagcaatttgttaagcgtcactacagattcaatatgactattcttgttctcttcttctaatactctcaaac |
4910123 |
T |
|
| Q |
226 |
gttcttggagctctttcacgtacttgattgcatctcctaggactgaagccttgtccatctgt |
287 |
Q |
| |
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|||| |||||||||||||| | |||||| |||||||||| |||||||| |||||| ||||| |
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| T |
4910122 |
gttcctggagctctttcacatgcttgatagcatctcctatgactgaagtattgtccgtctgt |
4910061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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