View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13820_low_11 (Length: 357)

Name: NF13820_low_11
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13820_low_11
NF13820_low_11
[»] chr2 (16 HSPs)
chr2 (216-337)||(8417081-8417202)
chr2 (181-338)||(8411999-8412156)
chr2 (181-338)||(8417217-8417374)
chr2 (181-338)||(8434097-8434254)
chr2 (181-338)||(8375850-8376007)
chr2 (181-338)||(8439096-8439253)
chr2 (14-143)||(8417412-8417541)
chr2 (181-338)||(8395533-8395690)
chr2 (181-338)||(8405882-8406039)
chr2 (191-338)||(8431138-8431285)
chr2 (21-140)||(8439297-8439416)
chr2 (21-140)||(8375687-8375806)
chr2 (21-140)||(8412200-8412319)
chr2 (21-140)||(8434298-8434417)
chr2 (42-143)||(8395394-8395495)
chr2 (42-143)||(8406077-8406178)
[»] chr4 (3 HSPs)
chr4 (186-338)||(55336244-55336396)
chr4 (186-338)||(55330806-55330958)
chr4 (47-103)||(55331053-55331109)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 216 - 337
Target Start/End: Complemental strand, 8417202 - 8417081
Alignment:
Q  216 atgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8417202 atgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcag 8417103  T
Q  316 ggccattactcacaggaattgc 337  Q
    ||||||||||||||||||||||    
T  8417102 ggccattactcacaggaattgc 8417081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 181 - 338
Target Start/End: Complemental strand, 8412156 - 8411999
Alignment:
Q  181 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 280  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||| |||| |||||||||||    
T  8412156 tgaacaatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacat 8412057  T
Q  281 agctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  8412056 agcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgca 8411999  T

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Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 181 - 338
Target Start/End: Complemental strand, 8417374 - 8417217
Alignment:
Q  181 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 280  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||| |||| |||||||||||    
T  8417374 tgaacaacggatggagtaaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacat 8417275  T
Q  281 agctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  8417274 agcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgca 8417217  T

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Target: chr2; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 181 - 338
Target Start/End: Complemental strand, 8434254 - 8434097
Alignment:
Q  181 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 280  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||| |||| |||||||||||    
T  8434254 tgaacaatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacat 8434155  T
Q  281 agctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  8434154 agcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgca 8434097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 8375850 - 8376007
Alignment:
Q  181 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 280  Q
    |||| ||||| |||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||    
T  8375850 tgaataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacat 8375949  T
Q  281 agctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    ||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  8375950 agcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgca 8376007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 181 - 338
Target Start/End: Complemental strand, 8439253 - 8439096
Alignment:
Q  181 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 280  Q
    |||| ||||| |||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||    
T  8439253 tgaataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacat 8439154  T
Q  281 agctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    ||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  8439153 agcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgca 8439096  T

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Target: chr2; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 8417541 - 8417412
Alignment:
Q  14 tactgaagaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgct 113  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |||||||||    
T  8417541 tactaaagaagatgtcaaagaagctattgaaaaagttttggcacatgataaagcacacccacttcctttattgggagcaatgcttgaaaattaccctgct 8417442  T
Q  114 aaatttgttcctgctaattggtggccttcc 143  Q
    ||||||||||||||||||||||||||||||    
T  8417441 aaatttgttcctgctaattggtggccttcc 8417412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 8395533 - 8395690
Alignment:
Q  181 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 280  Q
    |||| |||||||||||| ||||||| ||||||||||||  |||||||||||| ||| ||||  ||||||| |||||||||||| |||| |||||||||||    
T  8395533 tgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacat 8395632  T
Q  281 agctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  8395633 agctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgca 8395690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 181 - 338
Target Start/End: Complemental strand, 8406039 - 8405882
Alignment:
Q  181 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 280  Q
    |||| |||||||||||| ||||||| ||||||||||||  |||||||||||| ||| ||||  ||||||| |||||||||||| |||| |||||||||||    
T  8406039 tgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacat 8405940  T
Q  281 agctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  8405939 agctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgca 8405882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 191 - 338
Target Start/End: Complemental strand, 8431285 - 8431138
Alignment:
Q  191 atggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaag 290  Q
    ||||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||| | |||||||||| | || |||||||||||||| ||||||    
T  8431285 atggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaag 8431186  T
Q  291 gtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    ||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  8431185 gtaaacaagagtttggcaattgcagggccattactctcaggaattgca 8431138  T

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Target: chr2; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 8439416 - 8439297
Alignment:
Q  21 gaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttg 120  Q
    |||||||||||||| || || ||||  |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| | |||||||    
T  8439416 gaagatgtcaaagatgcaatggaaaaggttttggcacttgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttg 8439317  T
Q  121 ttcctgctaattggtggcct 140  Q
      ||||||||||||||||||    
T  8439316 aacctgctaattggtggcct 8439297  T

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Target: chr2; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 8375687 - 8375806
Alignment:
Q  21 gaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttg 120  Q
    |||||||||||||| || || ||||  ||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||| | |||||||    
T  8375687 gaagatgtcaaagatgcaatggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttg 8375786  T
Q  121 ttcctgctaattggtggcct 140  Q
      ||||||||||||||||||    
T  8375787 aacctgctaattggtggcct 8375806  T

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Target: chr2; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 8412319 - 8412200
Alignment:
Q  21 gaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttg 120  Q
    |||||||||||||| || || ||||  ||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||| | |||||||    
T  8412319 gaagatgtcaaagatgcaatggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttg 8412220  T
Q  121 ttcctgctaattggtggcct 140  Q
      ||||||||||||||||||    
T  8412219 aacctgctaattggtggcct 8412200  T

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Target: chr2; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 8434417 - 8434298
Alignment:
Q  21 gaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttg 120  Q
    |||||||||||||| || || ||||  ||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||| | |||||||    
T  8434417 gaagatgtcaaagatgcaatggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttg 8434318  T
Q  121 ttcctgctaattggtggcct 140  Q
      ||||||||||||||||||    
T  8434317 aacctgctaattggtggcct 8434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 8395394 - 8395495
Alignment:
Q  42 gaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttgttcctgctaattggtggcctt 141  Q
    |||| ||||||||| ||||| |||||||| |||||||| ||||| |||| |||||||||||| |||||||| |||||||  ||||||| |||||||||||    
T  8395394 gaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtggcctt 8395493  T
Q  142 cc 143  Q
    ||    
T  8395494 cc 8395495  T

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Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 8406178 - 8406077
Alignment:
Q  42 gaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttgttcctgctaattggtggcctt 141  Q
    |||| ||||||||| ||||| |||||||| |||||||| ||||| |||| |||||||||||| |||||||| |||||||  ||||||| |||||||||||    
T  8406178 gaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtggcctt 8406079  T
Q  142 cc 143  Q
    ||    
T  8406078 cc 8406077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 338
Target Start/End: Complemental strand, 55336396 - 55336244
Alignment:
Q  186 aatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctt 285  Q
    |||||||||||| ||||||||||||||||||||  ||||||| |||||||  ||||||| |||||   |||||| ||| | || |||||||| ||||| |    
T  55336396 aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat 55336297  T
Q  286 tgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    ||||| |  |||||||| | ||||| ||||| ||||||||||| |||||||||    
T  55336296 tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgca 55336244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 338
Target Start/End: Complemental strand, 55330958 - 55330806
Alignment:
Q  186 aatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctt 285  Q
    |||||||||||| | |||||||||| |||| ||   |||||| |||||||  | || |  ||||||  |||||||||| | || |||||||| ||||| |    
T  55330958 aatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaatatagcat 55330859  T
Q  286 tgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgca 338  Q
    | |||||  | ||||||||||||| ||| || ||||||||||| |||||||||    
T  55330858 taaaggttaataagagtttagcaactgctggtccattactcactggaattgca 55330806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 55331109 - 55331053
Alignment:
Q  47 agttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaa 103  Q
    ||||||||||||||| ||||| || |||||||||||||| || || |||||||||||    
T  55331109 agttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaa 55331053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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