View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_12 (Length: 350)
Name: NF13820_low_12
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 41993072 - 41992731
Alignment:
| Q |
1 |
atagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctcaacttaactaactacttagcatgtgtttgg |
100 |
Q |
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| T |
41993072 |
atagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctcaacttaactaactacttagcatgtgtttgg |
41992973 |
T |
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| Q |
101 |
ttgaacggtggacactgctaccacgagttcaaagctctctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgccgcg |
200 |
Q |
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| T |
41992972 |
ttgaacggtggacactgctaccacgagttcaaagcactctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgccgcg |
41992873 |
T |
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| Q |
201 |
a-ttttagtgtttaccaaacacatgtgtactttcaattactcatgccaacatagaagcatgaccacacaccttcttattatgtatagcctagccctttgc |
299 |
Q |
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| T |
41992872 |
atttttagtgtttaccaaacacatgtgtactttcaattactcatgccaacatagaagcatgaccacacaccttcttattatgtatagcctagccctttgc |
41992773 |
T |
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| Q |
300 |
tccttaaggactcctccaagtcctctactagatgatgatgat |
341 |
Q |
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| T |
41992772 |
tccttaaggactcctccaagtcctctactagatgatgatgat |
41992731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 22020954 - 22021040
Alignment:
| Q |
237 |
tactcatgccaacatagaagcatgaccacacaccttcttattatgtatagcctagccctttgctccttaaggactcctccaagtcct |
323 |
Q |
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| T |
22020954 |
tactcatgccaacaaaggagcatgatcacacatctcctaattatgtatagccttgccctttgctctctaagtactcccccaaatcct |
22021040 |
T |
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