View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13820_low_13 (Length: 328)

Name: NF13820_low_13
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13820_low_13
NF13820_low_13
[»] chr4 (4 HSPs)
chr4 (200-328)||(47863461-47863588)
chr4 (203-289)||(5169489-5169574)
chr4 (215-259)||(56083560-56083604)
chr4 (215-289)||(51569923-51569996)
[»] chr3 (6 HSPs)
chr3 (215-289)||(11151397-11151471)
chr3 (203-289)||(39606429-39606514)
chr3 (203-289)||(54673439-54673524)
chr3 (203-294)||(48538031-48538122)
chr3 (215-289)||(37086543-37086609)
chr3 (215-280)||(52092696-52092761)
[»] chr1 (4 HSPs)
chr1 (215-289)||(24304114-24304188)
chr1 (203-289)||(13970788-13970874)
chr1 (215-259)||(51676149-51676193)
chr1 (215-289)||(35712624-35712697)
[»] chr8 (3 HSPs)
chr8 (203-289)||(40462446-40462532)
chr8 (215-259)||(9755878-9755922)
chr8 (234-288)||(34314995-34315048)
[»] scaffold0262 (1 HSPs)
scaffold0262 (203-280)||(2942-3018)
[»] chr6 (3 HSPs)
chr6 (215-280)||(12605065-12605129)
chr6 (215-285)||(21511668-21511738)
chr6 (206-280)||(25482333-25482406)
[»] chr7 (1 HSPs)
chr7 (215-288)||(23526571-23526644)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 47863461 - 47863588
Alignment:
Q  200 aacttatcatcaggagtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccacatcagtgagc 299  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||    
T  47863461 aacttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagattt-aaaattatgacgtgtcagtgccacatcagtcagc 47863559  T
Q  300 gtgccacatcatcacacagttagcgtgcc 328  Q
    |||||||||||||||||||||||||||||    
T  47863560 gtgccacatcatcacacagttagcgtgcc 47863588  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 5169574 - 5169489
Alignment:
Q  203 ttatcatcaggagtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||||| ||| ||||||| |||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| ||||||||    
T  5169574 ttatcattaggggtattttaggtatttcacatttttaacataattttaaaaataaaa-aaataaaaattatgacgtgtcagtgccac 5169489  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 56083604 - 56083560
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaa 259  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  56083604 gtatttttggtatttcacatttttaacatacttttaaaaaaaaaa 56083560  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 51569923 - 51569996
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||| |||||||||||| ||   ||||| ||||||||||| ||| |||||||||||||||||||| ||||||||    
T  51569923 gtattctgggtatttcactttccaaacattcttttaaaaattaaa-atttaaaaattatgacgtgtcagtgccac 51569996  T

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Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 11151397 - 11151471
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  11151397 gtattttgggtatttcacatttttaacatacttttaaaaataaaagattaaaaaattatgacgtgtcagtgccac 11151471  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 39606429 - 39606514
Alignment:
Q  203 ttatcatcaggagtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||||| ||| ||||||| |||||||||||||||||||||| |||||||||||||| |  |||||| |||||||||| ||||||||    
T  39606429 ttatcattaggggtattttaggtatttcacatttttaacataattttaaaaataaaa-aaataaaaaatatgacgtgtcagtgccac 39606514  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 54673439 - 54673524
Alignment:
Q  203 ttatcatcaggagtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||||| ||| ||||||| |||||||||||||||||||||| |||||||||||||| | | ||||||||||| |||| ||||||||    
T  54673439 ttatcattaggggtattttaggtatttcacatttttaacataattttaaaaataaaa-aataaaaaattatgatgtgtcagtgccac 54673524  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 48538122 - 48538031
Alignment:
Q  203 ttatcatcaggagtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccacatcag 294  Q
    ||||||| ||| |||| || ||||||||||||||| |||||| ||||||||||||||  |  ||||| | |||||||| |||||||| ||||    
T  48538122 ttatcattaggggtatattaggtatttcacattttcaacataattttaaaaataaaaattaaaaaaaatttgacgtgtcagtgccacttcag 48538031  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 37086543 - 37086609
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||||| |||||||||| |||| ||||||||||||||||        |||||||||||||||||| ||||||||    
T  37086543 gtattttaggtatttcacgttttaaacatacttttaaaaa--------ttaaaaattatgacgtgtcagtgccac 37086609  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 52092696 - 52092761
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgt 280  Q
    ||||||| |||||||||| ||   ||||| ||||||||||||||| ||  ||||||||||||||||    
T  52092696 gtattttaggtatttcactttccaaacattcttttaaaaataaaaaataaaaaaattatgacgtgt 52092761  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 24304114 - 24304188
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  24304114 gtattttgggtatttcacatttttaacatacttttaaaaataaaagattaaaaaattatgacgtgtcagtgccac 24304188  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 13970788 - 13970874
Alignment:
Q  203 ttatcatcaggagtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||||| ||| ||||||| |||||||||||||||||||||| |||||| ||||||| ||  ||||||||||||||||  |||||||    
T  13970788 ttatcattaggggtattttaggtatttcacatttttaacataattttaacaataaaaaataaaaaaattatgacgtgtcggtgccac 13970874  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 51676149 - 51676193
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaa 259  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  51676149 gtattttaggtatttcacatttttaacatacttttaaaaataaaa 51676193  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 35712697 - 35712624
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||||| |||||||||  ||||||||||| |||||||||||||| | | |||||||||||||||| ||||||||    
T  35712697 gtattttaggtatttcatctttttaacataattttaaaaataaaa-aataaaaaattatgacgtgtcagtgccac 35712624  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 40462532 - 40462446
Alignment:
Q  203 ttatcatcaggagtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgccac 289  Q
    ||||||| ||| ||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  40462532 ttatcattaggggtattttgggggtttcagatttttaacatacttttaaaaataaaagatttaaaaattatgatgtgtcagtgccac 40462446  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 9755922 - 9755878
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaa 259  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  9755922 gtatttttggtatttcacatttttaacatacttttaaaaataaaa 9755878  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 34314995 - 34315048
Alignment:
Q  234 tttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgcca 288  Q
    ||||||||||| |||||||||||||| | | ||||||||||||||||||| ||||    
T  34314995 tttttaacataattttaaaaataaaa-aataaaaaattatgacgtgttagggcca 34315048  T

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Target: scaffold0262 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 3018 - 2942
Alignment:
Q  203 ttatcatcaggagtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgt 280  Q
    ||||||| ||| ||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3018 ttatcattaggggtattttgggg-tttcagatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgt 2942  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 12605065 - 12605129
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgt 280  Q
    ||||||| |||||||||| |||| || |||||||||||||||||| || |||||||||||||||||    
T  12605065 gtattttaggtatttcac-ttttaaatatacttttaaaaataaaaaatataaaaattatgacgtgt 12605129  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 21511738 - 21511668
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtg 285  Q
    ||||||| ||||||| | ||||| ||||||||||||||||||||| ||  ||| |||||||||||| ||||    
T  21511738 gtattttaggtattttatattttaaacatacttttaaaaataaaaaataaaaacattatgacgtgtcagtg 21511668  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 25482406 - 25482333
Alignment:
Q  206 tcatcaggagtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgt 280  Q
    |||| ||| ||||||| |||||||| | |||| || |||||||||||||||||| || |||||||||||||||||    
T  25482406 tcattaggggtattttaggtatttctc-ttttaaatatacttttaaaaataaaaaatataaaaattatgacgtgt 25482333  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 23526571 - 23526644
Alignment:
Q  215 gtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgttagtgcca 288  Q
    ||||||| ||||||||||||||||| |||  ||  ||||||| || || ||||||| ||||||||| |||||||    
T  23526571 gtattttaggtatttcacatttttagcatttttaaaaaaatataaaatataaaaataatgacgtgtcagtgcca 23526644  T

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