View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_14 (Length: 325)
Name: NF13820_low_14
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 130 - 258
Target Start/End: Original strand, 11343793 - 11343918
Alignment:
| Q |
130 |
gccacatgtcacgcagctaagagttggg-taaatggaggtttcataaatggagggaagatgaattccatatacacacaatagagagagaaagaaagaaca |
228 |
Q |
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| T |
11343793 |
gccacatgtcacccatataagagttggggtaaatggaggtttcataaatggagggaagatgaactccatatacacacaat----agagaaagagagaaca |
11343888 |
T |
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| Q |
229 |
tgaataacaaagatggctaaggtttcataa |
258 |
Q |
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| T |
11343889 |
tgaataacaaagacggctaaggtttcataa |
11343918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 11343675 - 11343731
Alignment:
| Q |
12 |
gaagaagaagaaaggtcgtgtgaagtttgaaccagaagagtaagtgcgtgtgacttc |
68 |
Q |
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| T |
11343675 |
gaagaagaagaaaggtcgtgtgaagtttgaactagaagagtaagtgcgtgtggcttc |
11343731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 43379366 - 43379406
Alignment:
| Q |
12 |
gaagaagaagaaaggtcgtgtgaagtttgaaccagaagagt |
52 |
Q |
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| T |
43379366 |
gaagaagaagaagggtcgtgtgaactttgaaccagaagagt |
43379406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 13208144 - 13208183
Alignment:
| Q |
13 |
aagaagaagaaaggtcgtgtgaagtttgaaccagaagagt |
52 |
Q |
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| T |
13208144 |
aagaagaagaagggtcgtgtgaactttgaaccagaagagt |
13208183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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