View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_15 (Length: 323)
Name: NF13820_low_15
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 171 - 306
Target Start/End: Original strand, 3600737 - 3600871
Alignment:
| Q |
171 |
cagaggcgagcatgataacactataagagttgagaccagctcagccacacaagcacaacaacaacacaaaaccaagccatcatagccgctgccgaaaaat |
270 |
Q |
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| T |
3600737 |
cagaggcgagcatgataacactataagagttgagaccagctcagccacacaagcacaacaacaacacaaaaccaagccatcaca-acgctgccgaaaaat |
3600835 |
T |
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| Q |
271 |
gaggtttctacattgacctcttttgttaattggatg |
306 |
Q |
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| T |
3600836 |
gaggtttctacattgacctcttttgttaattggatg |
3600871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 3600562 - 3600690
Alignment:
| Q |
31 |
ccaaactcaatagaaacacgcataaacattacccatttcttacgcgtcttcatttccagtcacaaagccacaagaggccatggccacaagacccaaccag |
130 |
Q |
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| T |
3600562 |
ccaaactcaatagaaacacgcataaacattacccatttcttacgcgtcttcatttccactcataaa----------------gccacaagacccaaccag |
3600645 |
T |
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| Q |
131 |
acagactcacacaaacaccttgcaaaaacatctaaaacagcagag |
175 |
Q |
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| T |
3600646 |
acagactcacacaaacaccttgcaaaaacatctaaaacagcagag |
3600690 |
T |
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