View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_16 (Length: 314)
Name: NF13820_low_16
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_16 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 1555774 - 1556075
Alignment:
| Q |
13 |
atactatgcttgctattggctatcttccctgtactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1555774 |
atactatgcttgctattggctatcttccctgtactaaagatatcatcagatggtcgtaactttatggcgaaatatgagaatatcatcatggtcatactcg |
1555873 |
T |
|
| Q |
113 |
tccctcttgttttctttattcaattaaggctggcggatattagttcaatgagccctgttgacaacagaatctttgggatcttattcataattttgctatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1555874 |
tccctcttgttttctttattcaattaaggctggcggatattagttcaatgagccctgttgacaacagaatctttgggatcttattcataattttgctatc |
1555973 |
T |
|
| Q |
213 |
aaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcatcattttgatcgtttcggccatggtaattacatcgcttgtccattat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
1555974 |
aaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcatcattttgatcgtttcggccatggtaattgcatcgcttgtccatgat |
1556073 |
T |
|
| Q |
313 |
ac |
314 |
Q |
| |
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|| |
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|
| T |
1556074 |
ac |
1556075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 1461184 - 1460887
Alignment:
| Q |
17 |
tatgcttgctattggctatcttccctgtactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcgtccc |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1461184 |
tatgtttgctattggctatcttccctgtactaaagatatcatcagatggtcgtaactttatggcgaaatatgagaatatcatcatggtcatactcgtccc |
1461085 |
T |
|
| Q |
117 |
tcttgttttctttattcaattaaggctggcggatattagttcaatgagccctgttgacaacagaatctttgggatcttattcataattttgctatcaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1461084 |
tcttgttttctttattcaattaaggctggcggatattagttcaatgagccctgttgacaacagaatctttgggatcttattcataattttgctatcaaat |
1460985 |
T |
|
| Q |
217 |
gcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcatcattttgatcgtttcggccatggtaattacatcgcttgtccattatac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
1460984 |
gcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcatcattttgatcgtttcggccatggtaattgcatcgcttgtccatgatac |
1460887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 1456079 - 1455785
Alignment:
| Q |
13 |
atactatgcttgctattggctatcttccctgtactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcg |
112 |
Q |
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|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1456079 |
atactatgcttgctattggctatcttccctatgctaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcg |
1455980 |
T |
|
| Q |
113 |
tccctcttgttttctttattcaattaaggctggcggatattagttcaatgagccctgttgacaacagaatctttgggatcttattcataattttgctatc |
212 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1455979 |
tccctcttgttttctttattcaattaaggcagctttatattagttcaatcccccctgttgacaacagaatctttgggatcttattcatacttttgctatc |
1455880 |
T |
|
| Q |
213 |
aaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcatcattttgatcgtttcggccatggtaattacatcgcttgtcc |
307 |
Q |
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|| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| || || ||||||||| |
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| T |
1455879 |
aactgcaatttcagtcatagaagttggttttttctcatggactgctgctagcatcattttgatcgcttcggccatagtatttgcaccgcttgtcc |
1455785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 1567266 - 1567560
Alignment:
| Q |
13 |
atactatgcttgctattggctatcttccctgtactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1567266 |
atactatgcttgctattggctatcttccctatactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcg |
1567365 |
T |
|
| Q |
113 |
tccctcttgttttctttattcaattaaggctggcggatattagttcaatgagccctgttgacaacagaatctttgggatcttattcataattttgctatc |
212 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1567366 |
tccctcttgttttctttattcaattaaggcagctttatattagttcaatcccccctgttgacaacagaatctttgggatcttattcatacttttgctatc |
1567465 |
T |
|
| Q |
213 |
aaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcatcattttgatcgtttcggccatggtaattacatcgcttgtcc |
307 |
Q |
| |
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|| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||| || || ||||||||| |
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| T |
1567466 |
aactgcaatttcagtcatagaagttggttttttctcatggactgctgctagcatcattttgatcgcttcagccatagtatttgcaccgcttgtcc |
1567560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 287
Target Start/End: Complemental strand, 1454509 - 1454287
Alignment:
| Q |
65 |
gtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggctggcggatattagttcaatgag |
164 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| | || || |
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| T |
1454509 |
gtcgtaacttcatggcaaaacatgagaatatcatcatggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataacctt |
1454410 |
T |
|
| Q |
165 |
ccctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagc |
264 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| || || ||| | |||| |||||||| |||||||| || ||||||||||||| | ||||||| |
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|
| T |
1454409 |
ccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagc |
1454310 |
T |
|
| Q |
265 |
atcattttgatcgtttcggccat |
287 |
Q |
| |
|
||| |||||||| ||| |||||| |
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| T |
1454309 |
atctttttgatcttttgggccat |
1454287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 2164326 - 2164278
Alignment:
| Q |
173 |
acaacagaatctttgggatcttattcataattttgctatcaaatgcaat |
221 |
Q |
| |
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||||||| ||||||||| |||||||||||||| ||||||||| |||||| |
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|
| T |
2164326 |
acaacagcatctttggggtcttattcataattctgctatcaactgcaat |
2164278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 1430166 - 1430084
Alignment:
| Q |
13 |
atactatgcttgctattggctatcttccctgtactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatat |
95 |
Q |
| |
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|||||||||||| |||||| |||||||||| ||||||| | ||||| ||||| ||||| |||||||||||| ||||||| |
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|
| T |
1430166 |
atactatgcttggtattggttatcttccctaccctaaagacaacatcatatggtgcaaacttcatggcaaaatatcagaatat |
1430084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 1750190 - 1750087
Alignment:
| Q |
164 |
gccctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctag |
263 |
Q |
| |
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||||| |||| ||||| ||||||||||||||||| || || ||||||| ||||| |||| ||||||||||| ||| ||| |||||||| ||||||| |
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| T |
1750190 |
gccctattgataacagcgtctttgggatcttattcttacttgaactatcaagtgcaacttcaatcgtagaagttagttatttatcatggactgctgctat |
1750091 |
T |
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| Q |
264 |
catc |
267 |
Q |
| |
|
|||| |
|
|
| T |
1750090 |
catc |
1750087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 1754212 - 1754131
Alignment:
| Q |
181 |
atctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgcta |
262 |
Q |
| |
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||||||||||||||||||||| || ||||||| ||||||||||||| | |||||| ||||| | ||||||| ||||||| |
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| T |
1754212 |
atctttgggatcttattcatacttggactatcaagtgcaatttcagtcatggaagttagttttgtatcatggattgctgcta |
1754131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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